AT5G24470.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : pseudo-response regulator 5 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a pseudo-response regulator whose mutation affects various circadian-associated biological events such as flowering time in the long-day photoperiod conditions, red light sensitivity of seedlings during early photomorphogenesis, and the period of free-running rhythms of certain clock-controlled genes including CCA1 and APRR1/TOC1 in constant white light. Acts as transcriptional repressor of CCA1 and LHY. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
pseudo-response regulator 5 (PRR5); CONTAINS InterPro DOMAIN/s: CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver domain (InterPro:IPR001789), CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: pseudo-response regulator 9 (TAIR:AT2G46790.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:-:8356204..8358873 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 74840.70 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.21 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.49 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 667 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MWQTWPRQPI LLDIFSNPNT LSTTVRSWSV RHPLSIITVK TFARFFLDIF FSPHYYRKNK VLFFALFSFI SPLTNILICF VTVSLSLELS SSSSIIDLGF 101: SKLSVCVVIM TSSEEVVEVT VVKAPEAGGG KLSRRKIRKK DAGVDGLVKW ERFLPKIALR VLLVEADDST RQIIAALLRK CSYRVAAVPD GLKAWEMLKG 201: KPESVDLILT EVDLPSISGY ALLTLIMEHD ICKNIPVIMM STQDSVNTVY KCMLKGAADY LVKPLRRNEL RNLWQHVWRR QTSLAPDSFP WNESVGQQKA 301: EGASANNSNG KRDDHVVSGN GGDAQSSCTR PEMEGESADV EVSARDAVQM ECAKSQFNET RLLANELQSK QAEAIDFMGA SFRRTGRRNR EESVAQYESR 401: IELDLSLRRP NASENQSSGD RPSLHPSSAS AFTRYVHRPL QTQCSASPVV TDQRKNVAAS QDDNIVLMNQ YNTSEPPPNA PRRNDTSFYT GADSPGPPFS 501: NQLNSWPGQS SYPTPTPINN IQFRDPNTAY TSAMAPASLS PSPSSVSPHE YSSMFHPFNS KPEGLQDRDC SMDVDERRYV SSATEHSAIG NHIDQLIEKK 601: NEDGYSLSVG KIQQSLQREA ALTKFRMKRK DRCYEKKVRY ESRKKLAEQR PRIKGQFVRQ VQSTQAP |
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)