suba logo
AT5G23575.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31818904 (2020): mitochondrion
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21433285 (2011): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:16618929 (2006): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Transmembrane CLPTM1 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transmembrane CLPTM1 family protein; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, membrane; EXPRESSED IN: callus, leaf; CONTAINS InterPro DOMAIN/s: Cleft lip and palate transmembrane 1 (InterPro:IPR008429); BEST Arabidopsis thaliana protein match is: Transmembrane CLPTM1 family protein (TAIR:AT5G08500.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XPEVeggNOG:KOG2489EMBL:AY064127EMBL:AY143924
EMBL:CP002688EnsemblPlants:AT5G23575EnsemblPlants:AT5G23575.1entrez:832423
GeneID:832423GO:GO:0005783GO:GO:0016020GO:GO:0016021
Gramene:AT5G23575.1hmmpanther:PTHR21347hmmpanther:PTHR21347:SF0HOGENOM:HOG000201405
IntAct:Q8VZJ5InterPro:IPR008429KEGG:ath:AT5G23575OMA:YWHETNI
PANTHER:PTHR21347Pfam:PF05602PhylomeDB:Q8VZJ5Proteomes:UP000006548
RefSeq:NP_680213.1STRING:3702.AT5G23575.1TAIR:AT5G23575TMHMM:TMhelix
UniGene:At.19977UniGene:At.71132UniProt:Q8VZJ5
Coordinates (TAIR10) chr5:+:7946563..7950041
Molecular Weight (calculated) 68612.30 Da
IEP (calculated) 6.16
GRAVY (calculated) -0.23
Length 593 amino acids
Sequence (TAIR10)
(BLAST)
001: MAPPAGQTAA VAEAAGADGA PPQQQRGFGS TISGIVRIAV FWYFASKFFS PKQKPMDPTA PSQLMTNLFH KGESLDMWFY LSEQEKFNDF GNDRALYWHE
101: TNIPYAVWTP ESIRTKSLTY YPSETLQNNG SLYAHIFFAR SGFPIDPTDP EYQPLNSFSR THAVATYFPK QKKNKKKSLL GSPKDSDESE PEVEKVGDKK
201: SDPKEEVPVE WISLWKPNVT INLVDDFTHY SQNGVPPNIA PHLLVEPTTG NYYPTIYFNE FWLLRDKFIP VNETVSELPL NLEISPISMM KWQLFQQVDQ
301: SFQMQRSYGS MLDGESDELK KVFLEGNPYL LGITMFVSML HSVFDFLAFK NDIQFWNKNK SMEGLSAKSV VLNFICQFVI FLYLLDNDTS WMILASSGVG
401: VCIEFWKIGK AMRIEVDRSG MIPRLRFHDR ESYASNKTKE YDDIAIKFLS YVLLLLVIGL SIYSLAYERH KSWYSWILSS LTSCVYMFGF IMMCPQLFIN
501: YKLKSVAHLP WRQMTYKFLN TIIDDLFAFV IKMPILHRLS VFRDDVIFLI YLYQRWVYPV DKTRVNEFGF GGEDETAEKK LITEKEEEDK KTN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)