AT5G51570.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:golgi 0.971 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : SPFH/Band 7/PHB domain-containing membrane-associated protein family | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
SPFH/Band 7/PHB domain-containing membrane-associated protein family; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Band 7 protein (InterPro:IPR001107); BEST Arabidopsis thaliana protein match is: SPFH/Band 7/PHB domain-containing membrane-associated protein family (TAIR:AT5G62740.1); Has 5870 Blast hits to 5870 proteins in 1885 species: Archae - 189; Bacteria - 4209; Metazoa - 145; Fungi - 209; Plants - 268; Viruses - 20; Other Eukaryotes - 830 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr5:+:20949511..20951234 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 32380.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 5.08 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.12 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 292 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MGNTYCILGG CIEQASVGVV ERWGRFEHIA EPGCHFFNPL AGQWLAGVLS TRIKSLDVKI ETKTKDNVFV QLVCSIQYRV VKASADDAFY ELQNPKEQIQ 101: AYVFDVVRAL VPMMTLDALF EQKGEVAKSV LEELEKVMGA YGYSIEHILM VDIIPDPSVR KAMNEINAAQ RLQLASVYKG EAEKILQVKR AEAEAEAKYL 201: GGVGVARQRQ AITDGLRENI LNFSDKVEGT SAKEVMDLIM ITQYFDTIRD LGNSSKNTTV FLPHGPGHVR DISDQIRNGM MEAAASTQVN DV |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)