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AT3G58570.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:30961429 (2019): nucleus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:21433285 (2011): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, ATP-dependent helicase activity, ATP binding, nucleic acid binding; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G42520.1); Has 86488 Blast hits to 59724 proteins in 3531 species: Archae - 886; Bacteria - 35070; Metazoa - 23291; Fungi - 6787; Plants - 8100; Viruses - 385; Other Eukaryotes - 11969 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-2721-MONOMERBioGrid:10341EC:3.6.4.13eggNOG:ENOG410XNTI
eggNOG:KOG0335EMBL:AL137082EMBL:AY049285EMBL:AY088132
EMBL:BT002731EMBL:CP002686EnsemblPlants:AT3G58570EnsemblPlants:AT3G58570.1
entrez:825026Gene3D:3.40.50.300GeneID:825026Genevisible:Q9M2F9
GO:GO:0003723GO:GO:0004386GO:GO:0005524Gramene:AT3G58570.1
hmmpanther:PTHR24031hmmpanther:PTHR24031:SF235HOGENOM:HOG000268804InParanoid:Q9M2F9
InterPro:IPR001650InterPro:IPR011545InterPro:IPR014001InterPro:IPR014014
InterPro:IPR027417KEGG:ath:AT3G58570KO:K11594OMA:DQHIERP
PaxDb:Q9M2F9Pfam:PF00270Pfam:PF00271Pfam:Q9M2F9
Pfscan:PS51192Pfscan:PS51194Pfscan:PS51195PhylomeDB:Q9M2F9
PIR:T45677PRIDE:Q9M2F9PRO:PR:Q9M2F9PROSITE:PS51192
PROSITE:PS51194PROSITE:PS51195ProteinModelPortal:Q9M2F9Proteomes:UP000006548
RefSeq:NP_191416.1SMART:SM00487SMART:SM00490SMR:Q9M2F9
STRING:3702.AT3G58570.1SUPFAM:SSF52540TAIR:AT3G58570UniGene:At.831
UniProt:Q9M2F9
Coordinates (TAIR10) chr3:+:21657099..21660352
Molecular Weight (calculated) 69246.20 Da
IEP (calculated) 7.91
GRAVY (calculated) -0.50
Length 646 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSNSWADVS ESERAPSGGG WGYSRPSRTN YVPPHLRSRT PSSEFVAPSP GNNDRGGYGG ANSGYGGRGQ GYGGRGSGYG GRGGPVGGWN ARSGGWDRRD
101: TETNPFGNDG NADPAVNEQE NTVINFEAYE DIPIETSGDN VPPPVNTFAE IDLGEALNLN IQRCKYVKPT PVQRNAIPIL AAGRDLMACA QTGSGKTAAF
201: CFPIISGIMK DQHIERPRGV RGVYPLAVIL SPTRELACQI HDEARKFSYQ TGVKVVVAYG GTPVNQQIRE LERGVDILVA TPGRLNDLLE RGRVSLQMVR
301: FLALDEADRM LDMGFEPQIR KIVQQMDMPP PGVRQTMLFS ATFPREIQRL ASDFLSNYIF LAVGRVGSST DLIVQRVEFV HDSDKRSHLM DLLHAQRENG
401: NQGKQALTLV FVETKKGADS LENWLCINGF PATTIHGDRS QQEREVALRS FKTGRTPILV ATDVAARGLD IPHVAHVVNF DLPNDIDDYV HRIGRTGRAG
501: NSGLATAFFN DNNTTMAKPL AELMQEANQE VPDWLTRYAS RASFGGGKNR RSGGRFGGRD FRRESFSRGG GGADYYGGGG GYGGVPGGGY GAMPGGYGPV
601: PGGGYGNVPG GGYAPYGRGG GAYYGPGGYG TVPNQGYGPG VASAWD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)