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AT2G21130.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.956
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31541795 (2020): plasma membrane
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): cytosol None
  • PMID:31023727 (2019): mitochondrion
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:22318864 (2012): plasma membrane
  • PMID:21166475 (2011): cytosol
  • PMID:17644812 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, conserved site (InterPro:IPR020892); BEST Arabidopsis thaliana protein match is: rotamase CYP 1 (TAIR:AT4G38740.1); Has 16606 Blast hits to 16571 proteins in 2692 species: Archae - 108; Bacteria - 6886; Metazoa - 2917; Fungi - 1384; Plants - 1286; Viruses - 4; Other Eukaryotes - 4021 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G21130-MONOMERBioGrid:2001EC:5.2.1.8eggNOG:COG0652
eggNOG:KOG0865EMBL:AC006264EMBL:AF020434EMBL:AY087454
EMBL:BT025527EMBL:CP002685EnsemblPlants:AT2G21130EnsemblPlants:AT2G21130.1
entrez:816648Gene3D:2.40.100.10GeneID:816648Genevisible:Q9SKQ0
GO:GO:0003755GO:GO:0005829GO:GO:0005886GO:GO:0006457
GO:GO:0042277Gramene:AT2G21130.1hmmpanther:PTHR11071hmmpanther:PTHR11071:SF252
HOGENOM:HOG000065981InParanoid:Q9SKQ0InterPro:IPR002130InterPro:IPR020892
InterPro:IPR024936InterPro:IPR029000KEGG:ath:AT2G21130KO:K01802
MINT:MINT-8059712OMA:HPKVFFDPANTHER:PTHR11071PaxDb:Q9SKQ0
Pfam:PF00160Pfam:Q9SKQ0Pfscan:PS50072PhylomeDB:Q9SKQ0
PIR:E84597PIR:T50772PIRSF:PIRSF001467PRIDE:Q9SKQ0
PRINTS:PR00153PRO:PR:Q9SKQ0PROSITE:PS00170PROSITE:PS50072
ProteinModelPortal:Q9SKQ0Proteomes:UP000006548Reactome:R-ATH-6781823Reactome:R-ATH-6782135
Reactome:R-ATH-6782210RefSeq:NP_179709.1scanprosite:PS00170SMR:Q9SKQ0
STRING:3702.AT2G21130.1SUPFAM:SSF50891TAIR:AT2G21130UniGene:At.10399
UniProt:Q9SKQ0
Coordinates (TAIR10) chr2:-:9055619..9056143
Molecular Weight (calculated) 18465.10 Da
IEP (calculated) 8.34
GRAVY (calculated) -0.25
Length 174 amino acids
Sequence (TAIR10)
(BLAST)
001: MASHPKVFFD MTIGGAPAGK IVMELYTDKT PKTAENFRAL CTGEKGVGRS GKPLHFKGSS FHRVIPNFMC QGGDFTKGNG TGGESIYGAK FEDENFERKH
101: TGPGILSMAN AGANTNGSQF FICTVKTDWL DGKHVVFGQV VEGLDVVKAI EKIGSSSGKP TKPVVIADCG EISS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)