AT2G25730.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.978 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; Has 157 Blast hits to 144 proteins in 62 species: Archae - 0; Bacteria - 0; Metazoa - 101; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:10956751..10972729 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 274788.00 Da | ||||||||||||||||||||||||
| IEP (calculated) | 5.78 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.27 | ||||||||||||||||||||||||
| Length | 2464 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MDKETEILSR LAANHLHLAQ FEPLKATLLA LRVRNPDLAL TILQTIVSNA GRFDNVLWSR SCPSPSLLSF LSTIELLRFE NPTSPWGFDS ETLSLRADFL 0101: LMVQVLIDRV TERIKEDEES EDENSGLGNC LRVLQGVLEL GVERLKFVVD TSSSEGSNKI EEDAVVSLRS IVLDYSDVFD ALCCNIQRQL AGCESYGTCL 0201: VEEVQGEEQR KEMNEATCIG SPELDNINVF ALIQRNVQLA QLDAMKTKLD EGDERGAADR IRYLHLDYGV EKENYHAVLK ALLSRVMEKK DEYGDSWHMV 0301: RQNLLFMYKE ALSSNCGDLV QMIQGIQDDM LLPHSQLHLS LDNEQIPLPL ECFRRYLVDL KTERNIEDKS SPMSRAINSC LRDMYHYARI SGSHVLECVM 0401: CAALSSVKKE KLQEANDVLT LFPRLRPLVA SMGWDLLPGK TATRRKLMRL LWTSDSQALR LEESSLYGNQ TDELELASFA ACVNSGKSWT PKASFLMHGN 0501: VSSAHDDAEV DPFVENLVLE RLSAQSPLRV LFDVVPGIKF QDAISLISMQ PIASTAEAWK RIEDIELMHM RYALEAIVLA LGAMEEAMKD ETDASHRVVF 0601: YHLKDLTNHL EAIKNVPRKI MMVNIVISLL HIDDIRLSST QSASSACFSE KSNTPGLDPG DLGTEGEKEI VISFTKQLLD VLRRNLPSHP IEQECQLDGN 0701: YSTDGRQALE WRVSMAKRFI EDCEWRLSVM QHLLPLSERQ WGLKEVLSIL RAAPEKLLNL CMQRAKYDIG EEAVNRFALS AEDKATLELA EWVDNAFKGT 0801: LVEDVMSRTA EGAAAVQDLD FHSLGSQLSP LAMVLLFAQS QVMLSEIYPG GAPKVGFTYW DQVHEVAIIS VLRRILKRLQ EFLEQDDPQI LQASFSGDTI 0901: ISSCTESHRQ GQKDRALAML HQMIEDAHRG KRQFLSGKLH NLARALADEK PEVDVLKGDG SDMAVEKDGV LGLGLKYTKQ SPGSANRAVD GNPVSHETED 1001: KGKKSFGPLS NKTSTYLSQF ILYTAAIGDI VDGTDTTHDF NFFSLVYEWP KDLLTRLVFD RSSTDAAAKV AEVMSADFVH EVISACVPPV YPPRSGHGWA 1101: CIPVIPTTPC SHSEGKVLSP SIEAKPNCYV RSSATPGVPL YPLQLDVIRH LVKISPVRAV LACVFGGSIL YNGSDSIISS SLNDEFPSSP DADRLFYEFS 1201: LDQSERYPTL NRWIQMQTNL HRVSEFVVTP KQKPDDTRIK PDERTGIKRL LEHDSDSESD TEETFSKNNI QPALTDGSAR DGGSFENGVC RTDPTVFLSF 1301: DWENEVPYEK AVNRLIDEGK LMDALALSDR FLRNGASDWL LQLLIKSREE NPSTSGRSQG YGGQSNSWQY CLRLKDKQLA ATLALKCCIG DKLCRSTATY 1401: FRQMIAIIAG KRLSFFLLFE IMFGSWYARC VTLKNLNGKQ VEAECKEDPE GLALRLAGKG AVSAALEVAE SAGLSIDLRR ELQGRQLVKL LTTDPLNGGG 1501: PAEASRFLSS LQDSADALPV VMGAMQLLPD LRSKQLLVHF FLKRRDSNLS DLEVARLNSW ALGLKVLAAL PLPWQQRCSS LHEHPNLIFE ALLMRKQLQY 1601: ASLILKEFPA LRDNNVIMAY AAKAISVTII PPPREPRITV SASRLRQKSR AGPAVKASFT SSLSNFQREA RRAFSWAPRN AENRTTSKDV YRKRKNSGLG 1701: ASERAAWEAM TGIQEDQGSS YSADGQDRLP SVSIAEEWML TGDKTKDEGV RASHKYESTP DIILFKALLS LCSDELVSAR SAMDLCISQM KNVLSSKQLS 1801: EGASVETIGR AYHATEAFVQ GLSYAKSLLR KLLGTTESTN NNGERSRDVD DISSDAGSSS VGSQSTDEPS DVLSLTEIWL GRAELLQSLL GSGISTSLDD 1901: IADQLSSECL RDRLISDERY SMAVYMCKKC KIDVFPVWKA WGLALLRMER YAQARVKFKQ AFQLKGEDIP DVIQEIINTI EGGPPVDVSI VRSMYDHLAK 2001: SAPTILDDSL SADSYLNVLH MPSTFPRSER SRRSLESEKN SSVPGSDFED GPRSNLDTTR YSECTNYLQE HARQNLLGFM FRHGHFKDAC MLFFPQSGLP 2101: PPLQTSSVGA VSTSSSPQRT DPLATEYGTI ESLCEFCVGY GAISSLEEVI TERLESAKNQ DQAINQYIAG ALTRICAFFE INRHFNYLYK FLVLKKDYVT 2201: SGYCCIQLFM NSTTQEDAVR HLEHAKKYWS LTILGVQAHF EEALTARHRG SDSKKLVTKG VRGKSAAEKL SEETLVKLSS RVKMQIDVVK SFSDSEGAPW 2301: KHSLFGNPND SETSRRRCEI VETLVEKNFD LAYSVIYEFK LSAVDIYAGV ATSLADRKKG SQLTELFKNI KGTIQDDDWD QVLGAAINIY ANKHKERPDR 2401: LIDMLTSSHR KVLACVVCGR LKSAFQIASK SGSVADVQYV AHQALHANSH TVLDMCKQWL AKYM |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)