AT3G54390.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : sequence-specific DNA binding transcription factors | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
sequence-specific DNA binding transcription factors; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: aspartate/glutamate/uridylate kinase family protein (TAIR:AT3G10030.1); Has 350 Blast hits to 341 proteins in 21 species: Archae - 0; Bacteria - 2; Metazoa - 1; Fungi - 2; Plants - 343; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:20137912..20138863 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 33282.60 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.06 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.89 | ||||||||||||||||||||||||||||||||
| Length | 296 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MENGESNQEN LKSLNHDESL KKPSASSVVV DRLKRDEWSE GAVSTLLEAY ESKWVLRNRA KLKGQDWEDV AKHVSSRATH TKSPKTQTQC KNKIESMKKR 101: YRSESATADG SSWPLYPRLD HLLRGTQPQP QPQAVLPLNC SVPLLLLEPP LPAVAHPPQI SYGSNGVGKI PKEDGFKPEN KPEKDAEMDT DSSTPVVKTK 201: VRGKKVKRRY KEEKEEIAGS IRWLAEVVMR SERARMETMK EIERMRAEAE AKRGELDLKR TEIMANTQLE IARIFAAAAS SGQNKGVDSS LRIGRN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)