suba logo
AT4G37970.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plasma membrane 0.972
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : cinnamyl alcohol dehydrogenase 6
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
cinnamyl alcohol dehydrogenase 6 (CAD6); FUNCTIONS IN: oxidoreductase activity, zinc ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, zinc-containing, conserved site (InterPro:IPR002328), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: cinnamyl alcohol dehydrogenase 9 (TAIR:AT4G39330.1); Has 35385 Blast hits to 35371 proteins in 2946 species: Archae - 789; Bacteria - 23408; Metazoa - 1218; Fungi - 2700; Plants - 2633; Viruses - 3; Other Eukaryotes - 4634 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G37970-MONOMEREC:1.1.1.195eggNOG:COG1064eggNOG:KOG0023
EMBL:AL035538EMBL:AL161592EMBL:AY302075EMBL:CP002687
EMBL:Y16848EnsemblPlants:AT4G37970EnsemblPlants:AT4G37970.1entrez:829953
Gene3D:3.40.50.720Gene3D:3.90.180.10GeneID:829953Genevisible:O65621
GO:GO:0008270GO:GO:0009809GO:GO:0045551GO:GO:0052747
Gramene:AT4G37970.1hmmpanther:PTHR11695hmmpanther:PTHR11695:SF497HOGENOM:HOG000294667
InParanoid:O65621InterPro:IPR002085InterPro:IPR002328InterPro:IPR011032
InterPro:IPR013149InterPro:IPR013154InterPro:IPR016040InterPro:IPR020843
KEGG:ath:AT4G37970KO:K00083OMA:GFSVYPMPANTHER:PTHR11695
PaxDb:O65621Pfam:O65621Pfam:PF00107Pfam:PF08240
PhylomeDB:O65621PIR:T05624PRIDE:O65621PRO:PR:O65621
PROSITE:PS00059ProteinModelPortal:O65621Proteomes:UP000006548RefSeq:NP_195510.1
scanprosite:PS00059SMART:SM00829SMR:O65621STRING:3702.AT4G37970.1
SUPFAM:SSF50129SUPFAM:SSF51735TAIR:AT4G37970tair10-symbols:ATCAD6
tair10-symbols:CAD6UniGene:At.31213UniPathway:UPA00711UniProt:O65621
Coordinates (TAIR10) chr4:+:17849672..17852145
Molecular Weight (calculated) 39019.70 Da
IEP (calculated) 6.32
GRAVY (calculated) -0.04
Length 363 amino acids
Sequence (TAIR10)
(BLAST)
001: MERLSGEKEQ SVEAFGWAAR DSSGHLSPFV FSRRKTGEEE VRVKVLYCGI CHSDLHCLKN EWHSSIYPLV PGHEIIGEVS EIGNKVSKFN LGDKVGVGCI
101: VDSCRTCESC REDQENYCTK AIATYNGVHH DGTINYGGYS DHIVVDERYA VKIPHTLPLV SAAPLLCAGI SMYSPMKYFG LTGPDKHVGI VGLGGLGHIG
201: VRFAKAFGTK VTVVSSTTGK SKDALDTLGA DGFLVSTDED QMKAAMGTMD GIIDTVSASH SISPLIGLLK SNGKLVLLGA TEKPFDISAF SLILGRKSIA
301: GSGIGGMQET QEMIDFAAEH GIKAEIEIIS MDYVNTAMDR LAKGDVRYRF VIDISNTLAA TRS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)