AT1G49320.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.998 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : unknown seed protein like 1 | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes USPL1, a BURP domain protein targeted to the protein storage vacuoles. Overexpression of USPL1 affects seed development, protein storage vacuoles and lipid vesicles morphology and function. | ||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
unknown seed protein like 1 (USPL1); CONTAINS InterPro DOMAIN/s: BURP (InterPro:IPR004873); BEST Arabidopsis thaliana protein match is: BURP domain-containing protein (TAIR:AT5G25610.1); Has 493 Blast hits to 491 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 493; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:18246441..18247817 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 31812.80 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.14 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.09 | ||||||||||||||||||||||||||||||||||||
| Length | 280 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASTFRLSIS FLTLILFSLW VVEAHTSRKL ISIKEKEGQD ISHLLKDGEF DDPSLYMYFT LNDLKLGTKL LIYFYKNDLQ KLPPLLTRQQ ADLIPFTKSK 101: LDFLLDHFSI TKDSPQGKAI KETLGHCDAK AIEGEHKFCG TSLESLIDLV KKTMGYNVDL KVMTTKVMVP AQNSISYALH NYTFVEAPKE LVGIKMLGCH 201: RMPYPYAVYY CHGHKGGSRV FEVNLVTDDG RQRVVGPAVC HMDTSTWDAD HVAFKVLKME PRSAPVCHFF PLDNIVWVTK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)