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AT4G10380.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
ASURE: plasma membrane
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NOD26-like intrinsic protein 5;1
Curator
Summary (TAIR10)
Boric acid channel. Essential for efficient boron uptake and plant development under boron limitation. Also functions in arsenite transport and tolerance. Localized preferentially in outer membrane domains of root cells.
Computational
Description (TAIR10)
NOD26-like intrinsic protein 5;1 (NIP5;1); CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: NOD26-like intrinsic protein 6;1 (TAIR:AT1G80760.1); Has 10572 Blast hits to 10477 proteins in 2169 species: Archae - 110; Bacteria - 5205; Metazoa - 1362; Fungi - 448; Plants - 2368; Viruses - 0; Other Eukaryotes - 1079 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0580eggNOG:KOG0223EMBL:BT030327EnsemblPlants:AT4G10380
EnsemblPlants:AT4G10380.1entrez:826630ExpressionAtlas:A3KPG0Gene3D:1.20.1080.10
GeneID:826630GO:GO:0005215GO:GO:0016021Gramene:AT4G10380.1
hmmpanther:PTHR19139hmmpanther:PTHR19139:SF102InterPro:IPR000425InterPro:IPR022357
InterPro:IPR023271KEGG:ath:AT4G10380KO:K09874OMA:THTCVVE
PANTHER:PTHR19139PaxDb:A3KPG0Pfam:PF00230Pfam:Q9SV84
PhylomeDB:A3KPG0PRINTS:PR00783PROSITE:PS00221ProteinModelPortal:A3KPG0
Proteomes:UP000006548RefSeq:NP_192776.1scanprosite:PS00221SMR:A3KPG0
STRING:3702.AT4G10380.1SUPFAM:SSF81338TAIR:AT4G10380tair10-symbols:NIP5;1
tair10-symbols:NLM6tair10-symbols:NLM8TMHMM:TMhelixUniGene:At.33633
UniProt:A3KPG0UniProt:Q9SV84
Coordinates (TAIR10) chr4:-:6431530..6434510
Molecular Weight (calculated) 31494.50 Da
IEP (calculated) 8.49
GRAVY (calculated) 0.51
Length 304 amino acids
Sequence (TAIR10)
(BLAST)
001: MAPPEAEVGA VMVMAPPTPG TPGTPGGPLI TGMRVDSMSF DHRKPTPRCK CLPVMGSTWG QHDTCFTDFP SPDVSLTRKL GAEFVGTFIL IFTATAGPIV
101: NQKYDGAETL IGNAACAGLA VMIIILSTGH ISGAHLNPSL TIAFAALRHF PWAHVPAYIA AQVSASICAS FALKGVFHPF MSGGVTIPSV SLGQAFALEF
201: IITFILLFVV TAVATDTRAV GELAGIAVGA TVMLNILVAG PSTGGSMNPV RTLGPAVASG NYRSLWVYLV APTLGAISGA AVYTGVKLND SVTDPPRPVR
301: SFRR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)