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AT4G14465.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : AT-hook motif nuclear-localized protein 20
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
AT-hook motif nuclear-localized protein 20 (AHL20); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), Predicted AT-hook DNA-binding (InterPro:IPR014476); BEST Arabidopsis thaliana protein match is: AT-hook motif nuclear-localized protein 19 (TAIR:AT3G04570.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IHWNeggNOG:ENOG410Y9GREMBL:AK118702EMBL:AK227935
EMBL:AL161539EMBL:AY087587EMBL:BR000356EMBL:BT006423
EMBL:CP002687EMBL:Z97336EnsemblPlants:AT4G14465EnsemblPlants:AT4G14465.1
entrez:827093GeneID:827093Genevisible:Q8GWQ2GO:GO:0003677
GO:GO:0005634GO:GO:0006351GO:GO:0006355GO:GO:0042742
GO:GO:0045087GO:GO:0045824GO:GO:1900425Gramene:AT4G14465.1
hmmpanther:PTHR31100hmmpanther:PTHR31100:SF3HOGENOM:HOG000239043IntAct:Q8GWQ2
InterPro:IPR005175InterPro:IPR014476KEGG:ath:AT4G14465OMA:PPRIGSN
PaxDb:Q8GWQ2Pfam:PF03479Pfam:Q8GWQ2Pfscan:PS51742
PhylomeDB:Q8GWQ2PIRSF:PIRSF016021PRIDE:Q8GWQ2PRO:PR:Q8GWQ2
PROSITE:PS51742ProteinModelPortal:Q8GWQ2Proteomes:UP000006548RefSeq:NP_567432.1
SMR:Q8GWQ2STRING:3702.AT4G14465.1SUPFAM:SSF117856TAIR:AT4G14465
tair10-symbols:AHL20TMHMM:TMhelixUniGene:At.33280UniGene:At.67625
UniProt:Q8GWQ2
Coordinates (TAIR10) chr4:+:8320972..8321817
Molecular Weight (calculated) 29541.70 Da
IEP (calculated) 6.65
GRAVY (calculated) -0.41
Length 281 amino acids
Sequence (TAIR10)
(BLAST)
001: MANPWWTNQS GLAGMVDHSV SSGHHQNHHH QSLLTKGDLG IAMNQSQDND QDEEDDPREG AVEVVNRRPR GRPPGSKNKP KAPIFVTRDS PNALRSHVLE
101: ISDGSDVADT IAHFSRRRQR GVCVLSGTGS VANVTLRQAA APGGVVSLQG RFEILSLTGA FLPGPSPPGS TGLTVYLAGV QGQVVGGSVV GPLLAIGSVM
201: VIAATFSNAT YERLPMEEEE DGGGSRQIHG GGDSPPRIGS NLPDLSGMAG PGYNMPPHLI PNGAGQLGHE PYTWVHARPP Y
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)