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AT1G67030.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : zinc finger protein 6
Curator
Summary (TAIR10)
Encodes a zinc finger protein containing only a single zinc finger.
Computational
Description (TAIR10)
zinc finger protein 6 (ZFP6); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: cytosolic ribosome; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2 and C2HC zinc fingers superfamily protein (TAIR:AT1G68360.1); Has 1119 Blast hits to 1119 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 2; Plants - 1114; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JP2KeggNOG:ENOG4111859EMBL:AC007152EMBL:AY050387
EMBL:AY093800EMBL:CP002684EMBL:L39649EnsemblPlants:AT1G67030
EnsemblPlants:AT1G67030.1entrez:843022GeneID:843022Genevisible:Q39265
GO:GO:0003700GO:GO:0006351GO:GO:0006355GO:GO:0007275
GO:GO:0009736GO:GO:0009740GO:GO:0010026GO:GO:0022626
GO:GO:0044212GO:GO:0046872Gramene:AT1G67030.1HOGENOM:HOG000237466
InParanoid:Q39265InterPro:IPR007087KEGG:ath:AT1G67030OMA:ESRKYEC
PaxDb:Q39265Pfam:Q39265Pfscan:PS50157PhylomeDB:Q39265
PIR:S55886PRIDE:Q39265PRO:PR:Q39265PROSITE:PS00028
PROSITE:PS50157ProteinModelPortal:Q39265Proteomes:UP000006548RefSeq:NP_176873.1
scanprosite:PS00028SMR:Q39265STRING:3702.AT1G67030.1SUPFAM:SSF57667
TAIR:AT1G67030tair10-symbols:ZFP6UniGene:At.22303UniProt:Q39265
Coordinates (TAIR10) chr1:+:25016644..25017237
Molecular Weight (calculated) 21415.40 Da
IEP (calculated) 9.19
GRAVY (calculated) -0.64
Length 197 amino acids
Sequence (TAIR10)
(BLAST)
001: MATETSSLKL FGINLLETTS VQNQSSEPRP GSGSGSESRK YECQYCCREF ANSQALGGHQ NAHKKERQLL KRAQMLATRG LPRHHNFHPH TNPLLSAFAP
101: LPHLLSQPHP PPHMMLSPSS SSSKWLYGEH MSSQNAVGYF HGGRGLYGGG MESMAGEVKT HGGSLPEMRR FAGDSDRSSG IKLENGIGLD LHLSLGP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)