AT3G50300.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.701 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : HXXXD-type acyl-transferase family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
HXXXD-type acyl-transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: HXXXD-type acyl-transferase family protein (TAIR:AT3G50280.1); Has 2344 Blast hits to 2339 proteins in 183 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 196; Plants - 2144; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:18644043..18645389 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 50251.90 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 6.46 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.16 | ||||||||||||||||||||||||||||
| Length | 448 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDDVTVISSS IVQPGNARHS GREKIHLTPS DLSLLYLNYP QRSLLFPKPY PETRFISRLK SSLSTSLEIY FPLAGRLVKV NNHEDNTVSF YIDCDDGRGV 101: KFVHAIAESV SVSDILQPHG SVPDFFRLFF PMNGVRSIDG LSEPLLALQV TEIKDGIVIS FGYNHLVADG SSMWNFIHVW SKLCLNGQWE IHQPLVLRGW 201: FLDNIDFPIH IPASEIETER ARNREVSTKE RVFHFTKEKL SDLKAKANDE IGSSDIKISS LQAVLAHLWR SIVRHSGLNQ EEESRCGVAA DFRQRLNPPL 301: DKDCFGNVAN LGLTTATVGD LLDRGLGWAA LQINKTVRLH TNENFRTFSE NWVRNGKIPR IDVRSRMGDH GFMVSNSPWF QVYDNDFGLG KPMAVRAGPA 401: NGIGGKLVVF RGIEEGSIDV HAILTLSLWS DVLLNLFDDV ESLENVIT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)