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AT4G03610.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.823
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Metallo-hydrolase/oxidoreductase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Metallo-hydrolase/oxidoreductase superfamily protein; BEST Arabidopsis thaliana protein match is: Metallo-hydrolase/oxidoreductase superfamily protein (TAIR:AT1G30300.1); Has 2341 Blast hits to 2330 proteins in 693 species: Archae - 12; Bacteria - 1231; Metazoa - 0; Fungi - 21; Plants - 106; Viruses - 0; Other Eukaryotes - 971 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1235eggNOG:ENOG410IJQCEMBL:CP002687EnsemblPlants:AT4G03610
EnsemblPlants:AT4G03610.1entrez:825661ExpressionAtlas:F4JGA4Gene3D:3.60.15.10
GeneID:825661Gramene:AT4G03610.1hmmpanther:PTHR12553hmmpanther:PTHR12553:SF47
InParanoid:F4JGA4InterPro:IPR001279OMA:THICFPEPaxDb:F4JGA4
Pfam:PF12706Pfscan:PS51257ProteinModelPortal:F4JGA4Proteomes:UP000006548
RefSeq:NP_192270.4STRING:3702.AT4G03610.1SUPFAM:SSF56281TAIR:AT4G03610
UniGene:At.34148UniProt:F4JGA4
Coordinates (TAIR10) chr4:+:1605039..1606917
Molecular Weight (calculated) 34025.70 Da
IEP (calculated) 5.51
GRAVY (calculated) -0.21
Length 303 amino acids
Sequence (TAIR10)
(BLAST)
001: MEKNQSDDDG TALIFLGTGC SGAVPDFRCL LQPSDPPCHV CSQSLSLLPH LNPNYRCNTS LLIDYCSKEE DGRHKYILID VGKSFREQII LTHEHADAVH
101: GLDEIRSLQP RGATIVDTDP LPVFLSQFTM ESIATRFPYL VEKKVKEVPR RVSLLDWKNI EENCDEPFAA SGLSFTPLPV MHGEDYIALG FLFGDKSKVA
201: YISDVSRIPP STEYAISKAG AGQLDLLILD TNIPWKRGPH PTHICFTEAL EILKRLCPKR ALLTGMTHEF DHHEYNEILA EWSLREGIHV QLAHDGLRLP
301: IDL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)