AT2G22920.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : serine carboxypeptidase-like 12 | ||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
serine carboxypeptidase-like 12 (SCPL12); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: plant-type cell wall; EXPRESSED IN: stem, inflorescence meristem, hypocotyl, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 11 (TAIR:AT2G22970.3); Has 3940 Blast hits to 3855 proteins in 454 species: Archae - 0; Bacteria - 499; Metazoa - 627; Fungi - 829; Plants - 1550; Viruses - 0; Other Eukaryotes - 435 (source: NCBI BLink). | ||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:9753938..9757227 | ||||||||
| Molecular Weight (calculated) | 46693.70 Da | ||||||||
| IEP (calculated) | 5.58 | ||||||||
| GRAVY (calculated) | -0.21 | ||||||||
| Length | 408 amino acids | ||||||||
| Sequence (TAIR10) (BLAST) |
001: MKSTPKLLLL LLFIINHHVD SGSIVKFLPG FEGPLPFELE TGYIGIGEEE DVQLFYYFIK SERNPKEDPL LLWLSGGPGC SSITGLLFEN GPLALKSKVY 101: NGSVPSLVST TYSWTKTANI IFLDQPIGAG FSYSRIPLID TPSDTGEVKN IHEFLQKWLS KHPQFSSNPF YASGDSYSGM IVPALVQEIS KGNYICCKPP 201: INLQGYILGN PITYFEVDQN YRIPFSHGMA LISDELYESI RRDCKGNYFN VDPRNTKCLK LVEEYHKCTD ELNEFNILSP DCDTTSPDCF LYPYYLLGYW 301: INDESVRDAL HVNKSSIGKW ERCTYQNRIP YNKDINNSIP YHMNNSISGY RSLIYSGDHD LVVPFLATQA WIKSLNYSII HEWRPWMIKD QIAGYIIYFC 401: VIHENLFQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)