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AT3G62270.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : HCO3- transporter family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
HCO3- transporter family; FUNCTIONS IN: anion exchanger activity; INVOLVED IN: anion transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bicarbonate transporter, eukaryotic (InterPro:IPR003020), Bicarbonate transporter, C-terminal (InterPro:IPR011531); BEST Arabidopsis thaliana protein match is: HCO3- transporter family (TAIR:AT2G47160.1); Has 2572 Blast hits to 1412 proteins in 199 species: Archae - 0; Bacteria - 14; Metazoa - 1904; Fungi - 316; Plants - 231; Viruses - 2; Other Eukaryotes - 105 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XPHDeggNOG:KOG1172EMBL:AL138651EMBL:AY074323
EMBL:AY096485EMBL:CP002686EnsemblPlants:AT3G62270EnsemblPlants:AT3G62270.1
entrez:825400GeneID:825400Genevisible:Q9M1P7GO:GO:0005452
GO:GO:0005886GO:GO:0016021GO:GO:0048364Gramene:AT3G62270.1
hmmpanther:PTHR11453hmmpanther:PTHR11453:SF44HOGENOM:HOG000015213InParanoid:Q9M1P7
InterPro:IPR003020InterPro:IPR011531KEGG:ath:AT3G62270OMA:PCDSEIL
PANTHER:PTHR11453PaxDb:Q9M1P7Pfam:PF00955Pfam:Q9M1P7
PhylomeDB:Q9M1P7PIR:T48019PRIDE:Q9M1P7PRO:PR:Q9M1P7
ProteinModelPortal:Q9M1P7Proteomes:UP000006548Reactome:R-ATH-1237044Reactome:R-ATH-1247673
Reactome:R-ATH-425381RefSeq:NP_191786.1SMR:Q9M1P7STRING:3702.AT3G62270.1
TAIR:AT3G62270TMHMM:TMhelixUniGene:At.34147UniGene:At.67774
UniProt:Q9M1P7
Coordinates (TAIR10) chr3:-:23042528..23045633
Molecular Weight (calculated) 78618.40 Da
IEP (calculated) 8.62
GRAVY (calculated) 0.21
Length 703 amino acids
Sequence (TAIR10)
(BLAST)
001: MEETFVPFEG IKNDLKGRLM CYKQDWTGGI KAGFRILAPT TYIFFASAIP VISFGEQLER STDGVLTAVQ TLASTAICGI IHSIIGGQPL LILGVAEPTV
101: IMYTFMFNFA KGRPELGRNL FLAWSGWVCV WTSLILFVLA ICGACSFINR FTRVAGELFG LLIAMLFMQQ AIKGLVDEFR APAREDLKLV EFLPSWRFAN
201: GMFALVLSFG LLITALRSRK ARSWRYGTGW LRSLVADYGV PLMVLVWTGV SYIPTGDVPK GIPRRLFSPN PWSPGAYENW TVVKEMLQVP IVYIIGAFIP
301: ATMIAVLYYF DHSVASQLAQ QKEFNLRKPS SYHYDLLLLG FLTLMCGLLG IPPSNGVIPQ SPMHTKSLAT LKYQLLRNRL VATARKSIKQ NASLGQLYGN
401: MQDVYNQMQT PLVYQQPQGL KELRESTIQA TTFTGNLDAP VDETLFDIEK EIDDLLPIEV KEQRVSNLLQ AVMVGGCVAA MPLLKMIPTS VLWGYFAFMA
501: IESLPGNQFW ERILLLFTAP SRRFKVLEDN HATFVETVPF KTIAMFTIFQ TTYLLTCFGL TWIPIAGVMF PLLIMFLIPV RQYILPRFFK SAHLQDLDAA
601: EYEEAPALPF HLAVPEAEMG STASYPCDSE ILDEFITRSR GEFRHTCSPK VTSSTSTPVY NRNLSQVFSP RVIDLRGEMS PRLSGKGQNS PKPSPLNPSS
701: SSK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)