AT2G48080.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.979 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : oxidoreductase, 2OG-Fe(II) oxygenase family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
oxidoreductase, 2OG-Fe(II) oxygenase family protein; BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT4G02940.1); Has 179 Blast hits to 160 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 24; Fungi - 0; Plants - 151; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:19665192..19667092 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 48487.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 8.20 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.41 | ||||||||||||||||||||||||||||
| Length | 438 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAETPASPPL HPPVVLLSDS AAKDAMLTWF RGEFAAANAI IDALCAHLMQ ASGGSAQYES VMAALHRRRL NWIPVLQMQK YHSISQVTLQ LQQHLAKGFH 101: HHLDDDHDDD SPSSDITDGG SREEETLSIC CKHEDECESR GASLLKQSKR FSAKEHVRGH TANVVKGLKL YQDVFTRPQL SKLLDSINQL REAGRNHQLS 201: GETFVLFNKN TKGTKRELLQ LGVPIFGNTT DEHSVEPIPT LVQSVIDHLL QWRLIPEYKR PNGCVINFFD EDEHSQPFQK PPHVDQPIST LVLSESTMVF 301: GHRLGVDNDG NFRGSLTLPL KEGSLLVMRG NSADMARHVM CPSPNKRVAI TFFKLKPDSG KVQPPPTLWR PGTPSPLVML APAPKRLDAG TGVFLPWTPP 401: VSRKPAKHLP PRVQRLRLLS SSKSVADSES SSPEIGVS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)