AT3G47980.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Integral membrane HPP family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Integral membrane HPP family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane, chloroplast; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: HPP (InterPro:IPR007065); BEST Arabidopsis thaliana protein match is: Integral membrane HPP family protein (TAIR:AT5G62720.1); Has 1433 Blast hits to 1433 proteins in 460 species: Archae - 0; Bacteria - 811; Metazoa - 0; Fungi - 64; Plants - 57; Viruses - 0; Other Eukaryotes - 501 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:+:17710477..17712631 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 26970.20 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.67 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.39 | ||||||||||||||||||||||||||||||||
| Length | 252 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASLPVKPLP SGHLQLHSRN LIIPPSMVTV GFKRHHFLGV SSYGLCIDES VRHMRSLRSS SNRRRVSKSA GVSMPVASSD DFPAVSWESW KPEKTTVAPS 101: LSDVIWPAAG AFAAMAIMGR IDQMLNPKGI SMSVAPLGAV SAILFTTPSA PAARKYNMFT AQIGCAAIGV LAFSAFGPSW LARSTALAAS IAFMVITRAN 201: HPPAASLPLL FIDGAKLHKL NFWYALFPGA AACILLCFLQ AIVGYLKENL KF |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)