AT5G62720.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Integral membrane HPP family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Integral membrane HPP family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane, chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HPP (InterPro:IPR007065); BEST Arabidopsis thaliana protein match is: Integral membrane HPP family protein (TAIR:AT3G47980.1); Has 1507 Blast hits to 1507 proteins in 452 species: Archae - 0; Bacteria - 819; Metazoa - 0; Fungi - 49; Plants - 59; Viruses - 0; Other Eukaryotes - 580 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:25191969..25194845 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 25828.90 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 10.73 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.52 | ||||||||||||||||||||||||||||
| Length | 243 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASVPVRPLP LLRRNITSTT ASKSSPMLAN VSSRHSLGIS TYDEFLKQIK TPATVNHRRR VSTVVASAGN LTAPSWDSWK PDKTAAATAL LLSDVIWPAA 101: GAFAAMALLG RMDQMLSPKG ISMSVAPLGA VSAILFITPS APAARKYNIF LAQIGCAAIG VVAFSVFGPG WLARSVALAA SIAFMVITRA NHPPAASLPL 201: MFIDGAKFHH LNFWYALFPG AAACVILCLL QSIVCYLKEN MKF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)