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AT4G32340.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 0.825
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G80130.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JE86eggNOG:ENOG4111BVBEMBL:AL021811EMBL:AL034567
EMBL:AL161581EMBL:AY087384EMBL:AY150386EMBL:CP002687
EnsemblPlants:AT4G32340EnsemblPlants:AT4G32340.1entrez:829368Gene3D:1.25.40.10
GeneID:829368Gramene:AT4G32340.1hmmpanther:PTHR26312hmmpanther:PTHR26312:SF73
HOGENOM:HOG000114717InterPro:IPR011990KEGG:ath:AT4G32340OMA:EMIQRYP
PhylomeDB:O49358PIR:T05344Proteomes:UP000006548RefSeq:NP_194960.1
SMR:O49358STRING:3702.AT4G32340.1SUPFAM:SSF48452TAIR:AT4G32340
UniGene:At.2033UniProt:O49358
Coordinates (TAIR10) chr4:-:15612741..15614219
Molecular Weight (calculated) 25622.50 Da
IEP (calculated) 4.71
GRAVY (calculated) -0.60
Length 238 amino acids
Sequence (TAIR10)
(BLAST)
001: MIMRSASSLD LNLRAAQKPS VPRVVTTART VSAATPRVAK PITRASSDGN LYKIQSPESI TKTISVYHEE TASLRVLEGS RLPQGGSNGG FGGRGGDGAG
101: GGGGGGGGSV DGYYEEMIQR YPGDTLLLSN YARFLKEVKG DGRKAEEYCE RAMLSESGRD GELLSMYGDL IWKNHGDGVR AQSYYDQAVQ SSPDDCNVLA
201: SYARFLWDAE EEVEEEESKH HEDGFSDSTY NPSVSVVS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)