AT3G15840.1::SUBA5

AT3G15840.1

Subcellular Consensus
(Prediction and Experimental)

min:

:max

SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?

Predictors

External Curations

AmiGO : plastid 17573537
TAIR : plastid 15028209
TAIR : plastid 17573537
TAIR : plastid 18431481

Experimental Localisations and PPI

FP	MS/MS	PPI
	PMID:31932409 (2020): plastid PMID:31615849 (2019): plastid plastid thylakoid PMID:30962257 (2019): plastid PMID:30783145 (2019): extracellular region plant-type cell wall PMID:24361574 (2014): plastid plastid stroma PMID:24124904 (2013): plastid PMID:21531424 (2011): plastid PMID:20061580 (2010): plastid plastid stroma PMID:18431481 (2008): plastid PMID:16648217 (2006): plastid PMID:15028209 (2004): plastid	PMID:21798944 (2011): AT1G60080.1:Y2H: PMID:21798944 (2011): AT1G22920.1:None: PMID:20049866 (2010): AT1G06680.1:None: PMID:20049866 (2010): AT3G63540.1:None: PMID:20049866 (2010): AT4G09010.1:None: PMID:20049866 (2010): AT3G56650.1:None: PMID:20049866 (2010): AT3G26060.1:None: PMID:20049866 (2010): AT5G66570.1:None: PMID:20049866 (2010): AT1G08550.1:None: PMID:20049866 (2010): AT3G23400.1:None: PMID:20049866 (2010): AT3G01480.1:None: PMID:20049866 (2010): AT3G50820.1:None: PMID:20049866 (2010): AT4G17740.1:None: PMID:20049866 (2010): AT4G18370.1:None: PMID:20049866 (2010): AT5G64040.1:None: PMID:20049866 (2010): AT5G46390.1:None: PMID:20049866 (2010): AT1G12250.1:None: PMID:20049866 (2010): AT3G27925.1:None:

SUBAcon links
AGI-AGI relationships

Coexpression	PPI
AT1G06460.1 peroxisome [10.21] AT4G27800.1 plastid [8.81] AT1G20020.1 plastid [8.77] AT3G26740.1 plastid [8.08] AT4G04330.1 plastid [7.71] AT1G70820.1 plastid [7.49] AT5G19540.1 plastid [7.41] AT2G31040.1 plastid [7.27] AT2G03310.1 peroxisome [7.09] AT4G32340.1 plastid [7.02]	AT1G60080.1 cytosol AT1G22920.1 nucleus AT3G50820.1 plastid AT5G66570.1 plastid AT5G64040.1 plastid AT5G46390.1 plastid AT4G18370.1 plastid AT4G17740.1 plastid AT4G09010.1 plastid AT3G63540.1 plastid AT3G56650.1 plastid AT1G06680.1 plastid AT3G27925.1 plastid AT3G26060.1 plastid AT3G23400.1 plastid AT3G01480.1 plastid AT1G12250.1 plastid AT1G08550.1 plastid

Description (TAIR10)

protein_coding : post-illumination chlorophyll fluorescence increase

Curator
Summary (TAIR10)

Encodes a chloroplast-targeted protein localized in the stroma that is a novel component essential for NDH-mediated non-photochemical reduction of the plastoquinone pool in chlororespiratory electron transport.

Computational
Description (TAIR10)

post-illumination chlorophyll fluorescence increase (PIFI); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: chlororespiration; LOCATED IN: thylakoid, chloroplast stroma, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 53 Blast hits to 53 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).

Protein Annotations

eggNOG:ENOG410II2M	eggNOG:ENOG4111HI9	EMBL:AB017071	EMBL:AY035025
EMBL:AY133879	EMBL:CP002686	EnsemblPlants:AT3G15840	EnsemblPlants:AT3G15840.1
entrez:820827	ExpressionAtlas:Q9LVZ5	GeneID:820827	GO:GO:0009507
GO:GO:0009570	GO:GO:0009579	GO:GO:0010478	Gramene:AT3G15840.1
hmmpanther:PTHR32429	hmmpanther:PTHR32429:SF9	IntAct:Q9LVZ5	OMA:KLTPNEQ
PhylomeDB:Q9LVZ5	Proteomes:UP000006548	RefSeq:NP_566528.1	STRING:3702.AT3G15840.1
TAIR:AT3G15840	tair10-symbols:PIFI	UniGene:At.24608	UniProt:Q9LVZ5

Coordinates (TAIR10)

chr3:-:5356782..5358418

Molecular Weight (calculated)

29692.40 Da

IEP (calculated)

5.88

GRAVY (calculated)

-0.34

Length

268 amino acids

Sequence (TAIR10)
(BLAST)

001: MAAAANTSAV FASPSQPLSS KRSFLYSSRI GPILRRFPRK KLDLQVKAVA TTLAPLEEIK EYKLPSWAMF EMGTAPVYWK TMNGLPPTSG EKLKLFYNPA
101: ASKLTLNEDY GVAFNGGFNQ PIMCGGEPRA MLKKDRGKAD SPIYTMQICI PKHAVNLIFS FTNGVDWDGP YRLQFQVPKR WQNKPIEFFN EGLANELSQD
201: GACERAIFPD SNVVPTRCTM IANLTVEGGD RCNLDLVPGC MDTNSEHFNP YANVDDGSCP LELSDSDE