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AT3G50820.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31975158 (2020): plastid
  • PMID:31932409 (2020): plastid
  • PMID:31871212 (2020): mitochondrion
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:30962257 (2019): plastid
  • PMID:30865669 (2019): plastid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30135097 (2018): plastid
  • PMID:29967049 (2018): plastid
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:25740923 (2015): plastid
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:24748391 (2014): plastid
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:24124904 (2013): plastid
  • PMID:23851315 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23673981 (2013): plastid
  • PMID:23667806 (2013): plastid plastid thylakoid
  • PMID:23390424 (2013): plastid plastid envelope
  • PMID:22829322 (2012): plastid plastid thylakoid plastid thylakoid lumen
  • PMID:22550958 (2012): plastid
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21539947 (2011): plastid plastid stroma
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21531424 (2011): plastid
  • PMID:21311031 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:20049866 (2010): plastid
  • PMID:19334764 (2009): plasma membrane
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18633119 (2008): plastid plastid thylakoid
  • PMID:18433418 (2008): plastid plastid thylakoid
  • PMID:18431481 (2008): plastid plastid thylakoid
  • PMID:16648217 (2006): plastid
  • PMID:16414959 (2006): plastid plastid stroma plastoglobules
  • PMID:16207701 (2006): plastid
  • PMID:15322131 (2004): plastid
  • PMID:15028209 (2004): plastid
  • PMID:14729914 (2004): plastid
  • PMID:11826309 (2002): plastid
  • PMID:11719511 (2002): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : photosystem II subunit O-2
Curator
Summary (TAIR10)
Encodes a protein which is an extrinsic subunit of photosystem II and which has been proposed to play a central role in stabilization of the catalytic manganese cluster. In <i>Arabidopsis thaliana</i> the PsbO proteins are encoded by two genes: <i>psbO1</i> and <i>psbO2</i>. PsbO2 is the minor isoform in the wild-type. Mutants defective in this gene have been shown to be affected in the dephosphorylation of the D1 protein of PSII.
Computational
Description (TAIR10)
photosystem II subunit O-2 (PSBO2); FUNCTIONS IN: oxygen evolving activity, poly(U) RNA binding; INVOLVED IN: photosynthesis, light reaction, photoinhibition, photosystem II assembly, photosystem II stabilization, regulation of protein amino acid dephosphorylation; LOCATED IN: in 9 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II manganese-stabilising protein PsbO (InterPro:IPR002628); BEST Arabidopsis thaliana protein match is: PS II oxygen-evolving complex 1 (TAIR:AT5G66570.1); Has 534 Blast hits to 532 proteins in 148 species: Archae - 0; Bacteria - 144; Metazoa - 1; Fungi - 0; Plants - 207; Viruses - 0; Other Eukaryotes - 182 (source: NCBI BLink).
Protein Annotations
BioGrid:9564DNASU:824246eggNOG:ENOG410IGC8eggNOG:ENOG410XP4G
EMBL:AJ145957EMBL:AL049862EMBL:AY050362EMBL:AY088799
EMBL:AY116934EMBL:CP002686EnsemblPlants:AT3G50820EnsemblPlants:AT3G50820.1
entrez:824246GeneID:824246Genevisible:Q9S841GO:GO:0005509
GO:GO:0008266GO:GO:0009507GO:GO:0009534GO:GO:0009535
GO:GO:0009570GO:GO:0009579GO:GO:0009654GO:GO:0010205
GO:GO:0010207GO:GO:0010287GO:GO:0016021GO:GO:0019684
GO:GO:0019898GO:GO:0031977GO:GO:0035304GO:GO:0042549
Gramene:AT3G50820.1gramene_pathway:1.10.3.2gramene_pathway:PWY-101HOGENOM:HOG000232492
InParanoid:Q9S841IntAct:Q9S841InterPro:IPR002628InterPro:IPR011250
iPTMnet:Q9S841KEGG:ath:AT3G50820KO:K02716OMA:CSLHSDL
PaxDb:Q9S841Pfam:PF01716Pfam:Q9S841PhylomeDB:Q9S841
PIR:T08403PRIDE:Q9S841PRO:PR:Q9S841ProteinModelPortal:Q9S841
Proteomes:UP000006548RefSeq:NP_190651.1SMR:Q9S841STRING:3702.AT3G50820.1
SUPFAM:SSF56925SWISS-2DPAGE:Q9S841TAIR:AT3G50820tair10-symbols:OEC33
tair10-symbols:PSBO-2tair10-symbols:PSBO2UniGene:At.21117UniProt:Q9S841
Coordinates (TAIR10) chr3:-:18891008..18892311
Molecular Weight (calculated) 35021.10 Da
IEP (calculated) 5.96
GRAVY (calculated) -0.35
Length 331 amino acids
Sequence (TAIR10)
(BLAST)
001: MATSLQAAAT FLQPAKIAAS PSRNVHLRSN QTVGKSFGLD SSQARLTCSL HSDLKDFAGK CSDAAKIAGF ALATSALVVS GAGAEGAPKR LTYDEIQSKT
101: YMEVKGTGTA NQCPTIDGGS ETFSFKAGKY TGKKFCFEPT SFTVKADSVS KNAPPDFQNT KLMTRLTYTL DEIEGPFEVG SDGSVKFKEE DGIDYAAVTV
201: QLPGGERVPF LFTVKQLEAS GKPESFSGKF LVPSYRGSSF LDPKGRGGST GYDNAVALPA GGRGDEEELS KENVKNTAAS VGEITLKITK SKPETGEVIG
301: VFESLQPSDT DLGAKVPKDV KIQGVWYGQI E
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)