AT1G12250.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentapeptide repeat-containing protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pentapeptide repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentapeptide repeat (InterPro:IPR001646); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G44920.2); Has 7687 Blast hits to 4280 proteins in 513 species: Archae - 134; Bacteria - 5724; Metazoa - 1; Fungi - 0; Plants - 235; Viruses - 4; Other Eukaryotes - 1589 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:4159287..4161269 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 30066.30 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.57 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.33 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 280 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAFSSLSPLP MKSLDISRSS SSVSRSPYHF QRYLLRRLQL SSRSNLEIKD SSNTREGCCS SAESNTWKRI LSAAMAAAVI ASSSGVPAMA ELNRFEADTR 101: GEFGIGSAAQ YGSADLSKTV HSNENFRRAN FTSADMRESD FSGSTFNGAY LEKAVAYKAN FSGADLSDTL MDRMVLNEAN LTNAVLVRSV LTRSDLGGAK 201: IEGADFSDAV IDLLQKQALC KYATGTNPLT GVDTRKSLGC GNSRRNAYGS PSSPLLSAPP QRLLGRDGFC DEKTGLCDVK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)