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AT2G44920.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31186290 (2019): plastid plastid stroma
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30135097 (2018): plastid
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22829322 (2012): plastid plastid thylakoid plastid thylakoid lumen
  • PMID:21531424 (2011): plastid
  • PMID:18433418 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid thylakoid
  • PMID:16648217 (2006): plastid
  • PMID:15322131 (2004): plastid
  • PMID:15028209 (2004): plastid
  • PMID:11826309 (2002): plastid
  • PMID:11719511 (2002): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: thylakoid, thylakoid lumen, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentapeptide repeat (InterPro:IPR001646); BEST Arabidopsis thaliana protein match is: potassium channel tetramerisation domain-containing protein / pentapeptide repeat-containing protein (TAIR:AT5G55000.1); Has 14558 Blast hits to 5841 proteins in 857 species: Archae - 260; Bacteria - 11175; Metazoa - 170; Fungi - 0; Plants - 186; Viruses - 55; Other Eukaryotes - 2712 (source: NCBI BLink).
Protein Annotations
EnsemblPlants:AT2G44920EnsemblPlants:AT2G44920.1entrez:819101hmmpanther:PTHR14136
Pfam:PF00805SUPFAM:SSF141571
Coordinates (TAIR10) chr2:+:18524419..18526236
Molecular Weight (calculated) 22432.50 Da
IEP (calculated) 9.37
GRAVY (calculated) -0.15
Length 210 amino acids
Sequence (TAIR10)
(BLAST)
001: MVILSNVSLF SCCNISQKPS LFSPSSRSSH CPIRCSQSQE GKEVVTSPLR SVVWSLGEEV SKRSLFALVS ASLFFVDPAL AFKGGGPYGQ GVTRGQDLSG
101: KDFSGQTLIR QDFKTSILRQ ANFKGAKLLG ASFFDADLTG ADLSEADLRG ADFSLANVTK VNLTNANLEG ATVTGNTSFK GSNITGAGEK RKENFHNNNK
201: HISLLPLSFT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)