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AT3G55330.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : PsbP-like protein 1
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
PsbP-like protein 1 (PPL1); FUNCTIONS IN: calcium ion binding; INVOLVED IN: photosynthesis; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II oxygen evolving complex protein PsbP (InterPro:IPR002683), Mog1/PsbP/DUF1795, alpha/beta/alpha sandwich (InterPro:IPR016124), Mog1/PsbP, alpha/beta/alpha sandwich (InterPro:IPR016123); BEST Arabidopsis thaliana protein match is: PsbP-like protein 2 (TAIR:AT2G39470.2); Has 595 Blast hits to 595 proteins in 103 species: Archae - 0; Bacteria - 112; Metazoa - 0; Fungi - 0; Plants - 355; Viruses - 0; Other Eukaryotes - 128 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IHM7eggNOG:ENOG4111N4VEMBL:AF419553EMBL:AL132954
EMBL:AY087663EMBL:AY097338EMBL:CP002686EnsemblPlants:AT3G55330
EnsemblPlants:AT3G55330.1entrez:824699Gene3D:3.40.1000.10GeneID:824699
Genevisible:P82538GO:GO:0005509GO:GO:0009507GO:GO:0009543
GO:GO:0009579GO:GO:0009654GO:GO:0015979GO:GO:0019898
GO:GO:0031977Gramene:AT3G55330.1hmmpanther:PTHR31407hmmpanther:PTHR31407:SF4
HOGENOM:HOG000232965InParanoid:P82538InterPro:IPR002683InterPro:IPR016123
KEGG:ath:AT3G55330KO:K02717OMA:VVAPWISPaxDb:P82538
Pfam:P82538Pfam:PF01789PhylomeDB:P82538PIR:PA0046
PIR:T47672PRIDE:P82538PRO:PR:P82538ProteinModelPortal:P82538
Proteomes:UP000006548RefSeq:NP_191093.1SMR:P82538STRING:3702.AT3G55330.1
SUPFAM:SSF55724TAIR:AT3G55330tair10-symbols:PPL1UniGene:At.27396
UniProt:P82538
Coordinates (TAIR10) chr3:-:20514031..20515275
Molecular Weight (calculated) 25624.70 Da
IEP (calculated) 9.90
GRAVY (calculated) -0.22
Length 230 amino acids
Sequence (TAIR10)
(BLAST)
001: MASLKLSPSS PISISKVGVI PSSKKGLSFL VKAEHHSSSS SSHLQDKCQR RLIVTFGVVA PWISLLSRAP LSFAAESKKG FLAVSDNKDA YAFLYPFGWQ
101: EVVIEGQDKV YKDVIEPLES VSVNLVPTSK QTIKEFGPPK QIAETLIKKV LAPPNQKTTL IDASEHDVDG KTYYQFEFTV QARNYTRHAL GTITVFNGNF
201: YTLTTGANER RWEKMKDRLH TVVDSFKITV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)