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AT5G21430.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31932409 (2020): plastid
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:30962257 (2019): plastid
  • PMID:30865669 (2019): plastid
  • PMID:30135097 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:24872594 (2014): plastid plastid envelope
  • PMID:24124904 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23667806 (2013): plastid plastid thylakoid
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:18431481 (2008): plastid plastid thylakoid
  • PMID:15322131 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Chaperone DnaJ-domain superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Chaperone DnaJ-domain superfamily protein; FUNCTIONS IN: heat shock protein binding; LOCATED IN: chloroplast thylakoid membrane, chloroplast; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623); Has 75 Blast hits to 75 proteins in 29 species: Archae - 0; Bacteria - 23; Metazoa - 6; Fungi - 2; Plants - 34; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
Protein Annotations
EC:1.6.5.-eggNOG:ENOG410IYJWeggNOG:ENOG410YHUJEMBL:AC140977
EMBL:AY091157EMBL:BT015681EMBL:CP002688EnsemblPlants:AT5G21430
EnsemblPlants:AT5G21430.1EnsemblPlants:AT5G21430.2entrez:832247ExpressionAtlas:Q84VQ4
Gene3D:1.10.287.110GeneID:832247GO:GO:0006810GO:GO:0009507
GO:GO:0009535GO:GO:0010598GO:GO:0016021GO:GO:0016491
GO:GO:0048038HOGENOM:HOG000085214InterPro:IPR001623KEGG:ath:AT5G21430
OMA:TITTQNYPaxDb:Q84VQ4Pfam:Q84VQ4PhylomeDB:Q84VQ4
PRIDE:Q84VQ4PRO:PR:Q84VQ4ProteinModelPortal:Q84VQ4Proteomes:UP000006548
RefSeq:NP_001031919.1RefSeq:NP_850862.1STRING:3702.AT5G21430.1SUPFAM:SSF46565
TAIR:AT5G21430TMHMM:TMhelixUniGene:At.44750UniProt:Q84VQ4
Coordinates (TAIR10) chr5:+:7222294..7223400
Molecular Weight (calculated) 24439.00 Da
IEP (calculated) 4.80
GRAVY (calculated) -0.39
Length 218 amino acids
Sequence (TAIR10)
(BLAST)
001: MASLSTITQP SLVHIPGESV LHHVPSTCSF PWKPTINTKR IICSPARNSS EVSAEAETEG GSSTAVDEAP KESPSLISAL NVERALRGLP ITDVDHYGRL
101: GIFRNCSYDQ VTIGYKERVK ELKEQGLDEE QLKTKMDLIK ESYTILSTVE ERRMYDWSLA RSEKAERYVW PFEVDIMEPS REEPPPQEPE DVGPTRILGY
201: FIGAWLVLGV ALSVAFNR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)