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AT4G37925.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31975158 (2020): plastid
  • PMID:31932409 (2020): plastid
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:30309965 (2018): plastid
  • PMID:30135097 (2018): plastid
  • PMID:29967049 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:24124904 (2013): plastid
  • PMID:23851315 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:18431481 (2008): plastid plastid thylakoid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : subunit NDH-M of NAD(P)H:plastoquinone dehydrogenase complex
Curator
Summary (TAIR10)
Encodes subunit NDH-M of NAD(P)H:plastoquinone dehydrogenase complex (Ndh complex) present in the thylakoid membrane of chloroplasts. This subunit is thought to be required for Ndh complex assembly.
Computational
Description (TAIR10)
subunit NDH-M of NAD(P)H:plastoquinone dehydrogenase complex (NDH-M); FUNCTIONS IN: oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor; INVOLVED IN: NADH dehydrogenase complex (plastoquinone) assembly; LOCATED IN: chloroplast thylakoid membrane, chloroplast, NAD(P)H dehydrogenase complex (plastoquinone); CONTAINS InterPro DOMAIN/s: NAD(P)H-quinone oxidoreductase subunit M (InterPro:IPR018922); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-711-MONOMERBioGrid:530952EC:1.6.5.-eggNOG:ENOG410IW88
eggNOG:ENOG4111NC5EMBL:AK227138EMBL:AL035538EMBL:AL161592
EMBL:BX829112EMBL:CP002687EnsemblPlants:AT4G37925EnsemblPlants:AT4G37925.1
entrez:3770591GeneID:3770591GO:GO:0006810GO:GO:0009507
GO:GO:0009535GO:GO:0010258GO:GO:0010598GO:GO:0016655
GO:GO:0048038Gramene:AT4G37925.1hmmpanther:PTHR36900hmmpanther:PTHR36900:SF1
HOGENOM:HOG000070913InterPro:IPR018922KEGG:ath:AT4G37925OMA:TYMASTH
PaxDb:Q2V2S7Pfam:PF10664Pfam:Q2V2S7PhylomeDB:Q2V2S7
PIR:T05619PRIDE:Q2V2S7PRO:PR:Q2V2S7Proteomes:UP000006548
RefSeq:NP_001031804.1STRING:3702.AT4G37925.1TAIR:AT4G37925tair10-symbols:NDH-M
TCDB:3.D.1.8.1UniGene:At.49770UniProt:Q2V2S7
Coordinates (TAIR10) chr4:-:17830748..17831485
Molecular Weight (calculated) 24796.20 Da
IEP (calculated) 4.54
GRAVY (calculated) -0.60
Length 217 amino acids
Sequence (TAIR10)
(BLAST)
001: MVAAFSYTAC TKLSLLHPSM VAQIRPRTTQ KAFVVTNPEQ DSTLEVQETE TLKEEQSTEK MKKQPTPLRP VEKQLNVKSK GMGDFGGQWL SSVTRHVRIY
101: AAYIDPETCE FDQSQMDKLT LILDPTEEFV WDDESCNKVY SYFQELVDHY EGAPLTEYTL RLIGSDVEHY IRKMLFDGEI QYNMDARVLN FSMGKPRVQF
201: NTSNIEGGGD GQPQEDA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)