AT3G48200.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 0.749 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 210 Blast hits to 148 proteins in 42 species: Archae - 0; Bacteria - 118; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:17832949..17837371 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 122165.00 Da | ||||||||||||||||||||||||
| IEP (calculated) | 10.00 | ||||||||||||||||||||||||
| GRAVY (calculated) | 0.06 | ||||||||||||||||||||||||
| Length | 1088 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MGLLKTSWLL LLFWVVSSPL CFRFHYCYGS ELSVKFLKAP PTTSRFTSAK FSFLAFEDGN RTCSSCKFRC KLDDRISLDC HQRKVSYSKL LDGDHTLEVC 0101: ANRMHGFGCN HYNWTVDTVS PTAFVTASMP FTSAQNVSVN ITFTEPCVGR GGFGCSSVNS CDLLVYGAGQ VIPSSFTVLD QYLRYSLLVG LSPDAQYGRI 0201: VLVMNKSVCS DIAGNNFKRA LGSRFFVHFD RRNVLVNLRT HVPEKLLKLN NQTRTVQATN DNNKLNVYLY FSEPVLNSSA EILRRLNTNQ GDLLPIDGNT 0301: NGNRRFAFMV TNTSRRAIVT VTLDSNSIRS RHGTPASPTA PLTFLYDTER PHVILNTTSG MRTRKHTIPV WIKFMKPVFG FNSSFVSISG GYLDSFEELS 0401: GSIYIVYVKA NTSTLSIKIP ENVTQDVAGN KNLASNILKV KHYSVPMISS VISWVTTYIF LVTSFVAGLL TLSTTSLYSL GAFPRPSPYL ISDPTRNLFR 0501: TACHIQFFAL TRWLPVTLPV DYYELVRGIQ WIIPYFPLPW ETKIKEQIMV ATSPYIGPHS FISKTHNNMI NLKTSTNAES VFGLPLTAME YRLFFETSNL 0601: KPEAEHVLGL PHSTVWRDFN RIMFWIAIIG GSLVLLHIVL SLILKFKKAH SEKKRSFGAF VFPRFELFLL ILALPSICKA ARSLIQGYFK HQGAAEASVI 0701: VGILVLCVVA ILLLALFLFL SVGITFGKLL QYKEIHQEGQ TFHWYQELIR VTLGPGKRGQ WTWKTENSVY LTRLGPVFED LRGPPKYMLT QISGSNPLKQ 0801: QDDRIIASDD ENEDAEAPCI QKLFGILRIY YTFLETVKRV CLGIIAGAFL DNETAKTPIV VLLSITSFQL FFLLLKKPFI KKKVQLVEII SIACQVGVFA 0901: SCLMLLAKDF PEASGKKLGI FMVVLFLIGF IMLMCNEWYS LYKQTKRLDQ INRSFLSGLK MFIIGLAALI LPQKMIKNKI PVAQLEARSS SNGGTTPEFR 1001: YRNSSGSRSS GSLDKPWLKQ IREMAKSSFT RDRSNSKVPS DPSCSKSGWS SSIWGTKTSG SSSKESSADY KSRPKGLYKD LEAIFASK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)