AT3G25690.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 ASURE: plastid What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Hydroxyproline-rich glycoprotein family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
actin binding protein required for normal chloroplast positioning | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
CHLOROPLAST UNUSUAL POSITIONING 1 (CHUP1); INVOLVED IN: chloroplast relocation; LOCATED IN: chloroplast outer membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G18570.1); Has 95745 Blast hits to 54491 proteins in 2679 species: Archae - 1109; Bacteria - 12651; Metazoa - 43667; Fungi - 7750; Plants - 7740; Viruses - 1623; Other Eukaryotes - 21205 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:9354061..9357757 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 111918.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.20 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.77 | ||||||||||||||||||||||||||||||||||||||||
| Length | 1004 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MFVRIGFVVA ASIAAVTVKR LNVKPSKPSK PSDNGEGGDK EQSVDPDYNL NDKNLQEEEE EEEEEVKLIN SVINQTRGSF SDYLDDDILP EFEDLLSGEI 0101: EYPLPDDDNN LEKAEKERKY EVEMAYNDGE LERLKQLVKE LEEREVKLEG ELLEYYGLKE QESDIVELQR QLKIKTVEID MLNITINSLQ AERKKLQEEL 0201: SQNGIVRKEL EVARNKIKEL QRQIQLDANQ TKGQLLLLKQ HVSSLQMKEE EAMNKDTEVE RKLKAVQDLE VQVMELKRKN RELQHEKREL SIKLDSAEAR 0301: IATLSNMTES DKVAKVREEV NNLKHNNEDL LKQVEGLQMN RFSEVEELVY LRWVNACLRY ELRNYQTPAG KISARDLSKN LSPKSQAKAK RLMLEYAGSE 0401: RGQGDTDLES NYSQPSSPGS DDFDNASMDS STSRFSSFSK KPGLIQKLKK WGKSKDDSSV QSSPSRSFYG GSPGRLSSSM NKQRGPLESL MIRNAGESVA 0501: ITTFGQVDQE SPGTPETPNL PRIRTQQQAS SPGEGLNSVA ASFHVMSKSV DNVLDEKYPA YKDRHKLAVE REKHIKHKAD QARAERFGGN VALPPKLAQL 0601: KEKRVVVPSV ITATGDQSNE SNESNEGKAS ENAATVTKMK LVDIEKRPPR VPRPPPRSAG GGKSTNLPSA RPPLPGGGPP PPPPPPGGGP PPPPGGGPPP 0701: PPPPPGALGR GAGGGNKVHR APELVEFYQS LMKRESKKEG APSLISSGTG NSSAARNNMI GEIENRSTFL LAVKADVETQ GDFVQSLATE VRASSFTDIE 0801: DLLAFVSWLD EELSFLVDER AVLKHFDWPE GKADALREAA FEYQDLMKLE KQVTSFVDDP NLSCEPALKK MYKLLEKVEQ SVYALLRTRD MAISRYKEFG 0901: IPVDWLSDTG VVGKIKLSSV QLAKKYMKRV AYELDSVSGS DKDPNREFLL LQGVRFAFRV HQFAGGFDAE SMKAFEELRS RAKTESGDNN NNNNNNSNEE 1001: ESVN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)