AT5G25630.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:peroxisome 0.991 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT5G21222.1); Has 43023 Blast hits to 13141 proteins in 298 species: Archae - 3; Bacteria - 54; Metazoa - 633; Fungi - 665; Plants - 40141; Viruses - 0; Other Eukaryotes - 1527 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:8947426..8949424 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 63897.70 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.85 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.23 | ||||||||||||||||||||||||||||||||||||||||
| Length | 574 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEDVNQEKKK VPPMSEPERS TPIKTTGGQY RFCKSCVEGS SCRTVRSRTK LMNVLIERGR PHEAQTVFKT LAETGHRPSL ISYTTLLAAM TVQKQYGSIS 101: SIVSEVEQSG TKLDSIFFNA VINAFSESGN MEDAVQALLK MKELGLNPTT STYNTLIKGY GIAGKPERSS ELLDLMLEEG NVDVGPNIRT FNVLVQAWCK 201: KKKVEEAWEV VKKMEECGVR PDTVTYNTIA TCYVQKGETV RAESEVVEKM VMKEKAKPNG RTCGIVVGGY CREGRVRDGL RFVRRMKEMR VEANLVVFNS 301: LINGFVEVMD RDGIDEVLTL MKECNVKADV ITYSTVMNAW SSAGYMEKAA QVFKEMVKAG VKPDAHAYSI LAKGYVRAKE PKKAEELLET LIVESRPNVV 401: IFTTVISGWC SNGSMDDAMR VFNKMCKFGV SPNIKTFETL MWGYLEVKQP WKAEEVLQMM RGCGVKPENS TFLLLAEAWR VAGLTDESNK AINALKCKDI 501: EIAKLEKLYQ KQSSGSSFNL LQIPVGKREL PTAKAMNLSA CKLGARVPII CQKQSQAQFG ISGQFVHSCT VFLS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)