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AT2G03390.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:18431481 (2008): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : uvrB/uvrC motif-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
uvrB/uvrC motif-containing protein; FUNCTIONS IN: DNA binding, nuclease activity; INVOLVED IN: nucleotide-excision repair; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Hemimethylated DNA-binding domain (InterPro:IPR011722), UvrB/UvrC protein (InterPro:IPR001943); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IEHAeggNOG:ENOG4110YKKEMBL:AK176535EMBL:AK176569
EMBL:CP002685EnsemblPlants:AT2G03390EnsemblPlants:AT2G03390.1entrez:814868
ExpressionAtlas:Q67Y99GeneID:814868GO:GO:0003677GO:GO:0009507
Gramene:AT2G03390.1hmmpanther:PTHR31350HOGENOM:HOG000238301InterPro:IPR001943
InterPro:IPR011722ncoils:CoilOMA:YNRPRHEPfam:PF02151
Pfam:PF08755PhylomeDB:Q67Y99Proteomes:UP000006548RefSeq:NP_178438.2
SMART:SM00992SMR:Q67Y99STRING:3702.AT2G03390.1SUPFAM:0050131
SUPFAM:SSF141255TAIR:AT2G03390TIGRfam:TIGR02097TIGRFAMs:TIGR02097
UniGene:At.41397UniProt:Q67Y99
Coordinates (TAIR10) chr2:-:1030635..1032354
Molecular Weight (calculated) 37442.20 Da
IEP (calculated) 5.80
GRAVY (calculated) -0.52
Length 330 amino acids
Sequence (TAIR10)
(BLAST)
001: MVQSQSLSTL TICGSVKVSS LLRNRLNSVK ASSLIGDRCV SCQFLRKSPS FRSHWKSLKQ RNLLRVEARW PFQGGGEQGL DPSSERSESA NEDILIFFFQ
101: LDLATRVQYA MNLEQYDIAQ QLREKLTEVE EESIRLQEGK RGSSAKSEAQ DKGISIIRLR ADLQNAIDSE DYGLAAKLRD EISKLEAESL AVSAKALAFE
201: KAEYAFRLGQ KLRHKTFGYR AVVCGMDPIC SESSSWMEAA EVEKLPRGSN QPFYQVLVDV RTHPDLLVAY VAEDNLLAPE KPDKERFDHP YISFLYYGAD
301: TAGDFIPVKQ LREKYNRPRH EVPFDSQDED
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)