AT3G10970.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
|||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), HAD-superfamily hydrolase, subfamily IA, variant 3 (InterPro:IPR006402); BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT4G11570.2); Has 4274 Blast hits to 4272 proteins in 1370 species: Archae - 31; Bacteria - 3851; Metazoa - 11; Fungi - 7; Plants - 184; Viruses - 0; Other Eukaryotes - 190 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:-:3433276..3436077 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 41569.90 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.10 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.35 | ||||||||||||||||||||||||||||||||
| Length | 365 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDCSCSTRPS SLLISSEPSF RFPHSNFSSN LSFQIPKDTK LVKQRLVVRS SSGSDYQNGD VNGFPLKPNK LFMQEAIGAE YGEGFETFRQ DGPLKVDVDF 101: WNEKLQDGFL QRIRYAMKPD EAYGLIFSWD NVVADTRSLK LEAWKQLAAE EGKEITEEVD IQRLMLYAGA DHVLRKVLFW EKTQSKIDRL KLRLSEIYYD 201: SLLKLTEPKE GLRDWLDAVT TARIPCAVVS NLDRKNMINA LERMGLQKYF QAVVSEEDGM ESIAHRFLSA AVKLDRKPSK CVVFEDDPRG ITAAHNCTMM 301: AVGLIGAHRA YDLVQADLAV GNFYELSVIN LRRLFANKGS TFMDHEKQII EKSPPKRKLT IDTIF |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)