AT1G54520.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1517 (InterPro:IPR010903); Has 276 Blast hits to 275 proteins in 83 species: Archae - 0; Bacteria - 108; Metazoa - 6; Fungi - 0; Plants - 113; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:+:20363565..20365874 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 42845.90 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 9.59 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.23 | ||||||||||||||||||||||||||||
| Length | 391 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASSSTFLEL TPFQWNQPLP YTQRPHHRTV LLYSKPQRRS NSIRLQISVK YKQSTSSSDP DLRSNFNPFE QIAIQVKKAL DSLKKPAIAA VLLGLLLFYD 101: PNSALAASGG RIGGNSFSSR SRSSSSSSSQ SYSVPRTSNP SFSYSARTAP YYGPSPFGGG FVGPAVGFGF GGFSSFSLIL VGFAAFVLVS GFLSDRSQDD 201: SILTDTQKTS VIKLQVGLLG LGRTLQQDFN RLAESSDTST PEGLSYVLTE ATLALLRHPD YCISCYSSVD VKPSIEKGEK RFNQLSIEER GKFDEETLVN 301: VNSIKRQSSK IRKASGFSNE YIVVTILMAA EGIHKLPPIN GTTDLKEALL KLGSIPRNKI MAVEVLWTPQ NEADALSERE LLEDYPLLRP L |
||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)