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AT5G49940.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24124904 (2013): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NIFU-like protein 2
Curator
Summary (TAIR10)
Encodes a protein containing the NFU domain and functions as a molecular scaffold for iron-sulfur cluster assembly and delivery. Homologous to the cyanobacterial CNFU protein and is targeted to the chloroplast.
Computational
Description (TAIR10)
NIFU-like protein 2 (NFU2); FUNCTIONS IN: structural molecule activity; INVOLVED IN: chloroplast organization, iron-sulfur cluster assembly; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NIF system FeS cluster assembly, NifU, C-terminal (InterPro:IPR001075); BEST Arabidopsis thaliana protein match is: NFU domain protein 3 (TAIR:AT4G25910.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:20303eggNOG:COG0694eggNOG:KOG2358EMBL:AB024032
EMBL:AF370353EMBL:AF428399EMBL:AJ512934EMBL:AK118652
EMBL:AK316745EMBL:AY062984EMBL:CP002688EnsemblPlants:AT5G49940
EnsemblPlants:AT5G49940.1entrez:835057EvolutionaryTrace:Q93W20GeneID:835057
Genevisible:Q93W20GO:GO:0005198GO:GO:0005506GO:GO:0009507
GO:GO:0009570GO:GO:0009658GO:GO:0016226GO:GO:0051537
hmmpanther:PTHR11178hmmpanther:PTHR11178:SF24HOGENOM:HOG000006174InParanoid:Q93W20
InterPro:IPR001075KEGG:ath:AT5G49940OMA:TMRMGIEPaxDb:Q93W20
PDB:2Z51PDBsum:2Z51Pfam:PF01106Pfam:Q93W20
PhylomeDB:Q93W20PRIDE:Q93W20PRO:PR:Q93W20ProDom:PD002830
ProteinModelPortal:Q93W20Proteomes:UP000006548RefSeq:NP_001078739.1RefSeq:NP_568715.1
SMR:Q93W20STRING:3702.AT5G49940.1SUPFAM:SSF117916TAIR:AT5G49940
tair10-symbols:ATCNFU2tair10-symbols:NFU2UniGene:At.26219UniProt:Q93W20
Coordinates (TAIR10) chr5:+:20315464..20317228
Molecular Weight (calculated) 25621.50 Da
IEP (calculated) 5.00
GRAVY (calculated) 0.05
Length 235 amino acids
Sequence (TAIR10)
(BLAST)
001: MQLLTLNPAA ISRTPPQAID PSSSSSLLLP FPQILSSQRA LGLVARPCNP LRRGLSRFLS SRQLFRRSKV VKAVATPDPI LEVPLTEENV ESVLDEIRPY
101: LMSDGGNVAL HEIDGNIVRV KLQGACGSCP SSTMTMKMGI ERRLMEKIPE IVAVEALPDE ETGLELNEEN IEKVLEEIRP YLIGTADGSL DLVEIEDPIV
201: KIRITGPAAG VMTVRVAVTQ KLREKIPSIA AVQLI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)