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AT3G61150.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : homeodomain GLABROUS 1
Curator
Summary (TAIR10)
Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family.
Computational
Description (TAIR10)
homeodomain GLABROUS 1 (HDG1); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (TAIR:AT4G00730.1); Has 11756 Blast hits to 11371 proteins in 530 species: Archae - 0; Bacteria - 4; Metazoa - 8768; Fungi - 189; Plants - 2580; Viruses - 0; Other Eukaryotes - 215 (source: NCBI BLink).
Protein Annotations
BioGrid:10601eggNOG:ENOG410IIN5eggNOG:ENOG411107HEMBL:AJ224338
EMBL:AL137898EMBL:AY050866EMBL:AY096757EMBL:CP002686
EnsemblPlants:AT3G61150EnsemblPlants:AT3G61150.1entrez:825287Gene3D:1.10.10.60
GeneID:825287Genevisible:Q9M2E8GO:GO:0003700GO:GO:0005634
GO:GO:0006351GO:GO:0008289GO:GO:0043565GO:GO:0048497
Gramene:AT3G61150.1hmmpanther:PTHR24326hmmpanther:PTHR24326:SF303HOGENOM:HOG000243256
InParanoid:Q9M2E8IntAct:Q9M2E8InterPro:IPR001356InterPro:IPR002913
InterPro:IPR009057InterPro:IPR017970iPTMnet:Q9M2E8KEGG:ath:AT3G61150
KO:K09338ncoils:CoilOMA:HTEYDENPaxDb:Q9M2E8
Pfam:PF00046Pfam:PF01852Pfam:Q9M2E8Pfscan:PS50071
Pfscan:PS50848PhylomeDB:Q9M2E8PIR:T47907PRIDE:Q9M2E8
PRO:PR:Q9M2E8PROSITE:PS00027PROSITE:PS50071PROSITE:PS50848
ProteinModelPortal:Q9M2E8Proteomes:UP000006548RefSeq:NP_191674.1scanprosite:PS00027
SMART:SM00234SMART:SM00389STRING:3702.AT3G61150.1SUPFAM:SSF46689
SUPFAM:SSF55961TAIR:AT3G61150tair10-symbols:HD-GL2-1tair10-symbols:HDG1
UniGene:At.21209UniProt:Q9M2E8
Coordinates (TAIR10) chr3:+:22630769..22634875
Molecular Weight (calculated) 88171.80 Da
IEP (calculated) 6.69
GRAVY (calculated) -0.32
Length 808 amino acids
Sequence (TAIR10)
(BLAST)
001: MNFNGFLDDG AGASKLLSDA PYNNHFSFSA VDTMLGSAAI APSQSLPFSS SGLSLGLQTN GEMSRNGEIM ESNVSRKSSR GEDVESRSES DNAEAVSGDD
101: LDTSDRPLKK KKRYHRHTPK QIQDLESVFK ECAHPDEKQR LDLSRRLNLD PRQVKFWFQN RRTQMKTQIE RHENALLRQE NDKLRAENMS VREAMRNPMC
201: GNCGGPAVIG EISMEEQHLR IENSRLKDEL DRVCALTGKF LGRSNGSHHI PDSALVLGVG VGSGGCNVGG GFTLSSPLLP QASPRFEISN GTGSGLVATV
301: NRQQPVSVSD FDQRSRYLDL ALAAMDELVK MAQTREPLWV RSSDSGFEVL NQEEYDTSFS RCVGPKQDGF VSEASKEAGT VIINSLALVE TLMDSERWAE
401: MFPSMVSRTS TTEIISSGMG GRNGALHLMH AELQLLSPLV PVRQVSFLRF CKQHAEGVWA VVDVSIDSIR EGSSSSCRRL PSGCLVQDMA NGYSKVTWIE
501: HTEYDENHIH RLYRPLLRCG LAFGAHRWMA ALQRQCECLT ILMSSTVSTS TNPSPINCNG RKSMLKLAKR MTDNFCGGVC ASSLQKWSKL NVGNVDEDVR
601: IMTRKSVNNP GEPPGIILNA ATSVWMPVSP RRLFDFLGNE RLRSEWDILS NGGPMKEMAH IAKGHDRSNS VSLLRASAIN ANQSSMLILQ ETSIDAAGAV
701: VVYAPVDIPA MQAVMNGGDS AYVALLPSGF AILPNGQAGT QRCAAEERNS IGNGGCMEEG GSLLTVAFQI LVNSLPTAKL TVESVETVNN LISCTVQKIK
801: AALHCDST
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)