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AT1G14820.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.942
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Sec14p-like phosphatidylinositol transfer family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Sec14p-like phosphatidylinositol transfer family protein; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: Sec14p-like phosphatidylinositol transfer family protein (TAIR:AT1G01630.1); Has 1699 Blast hits to 1699 proteins in 217 species: Archae - 0; Bacteria - 0; Metazoa - 335; Fungi - 476; Plants - 691; Viruses - 0; Other Eukaryotes - 197 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Y3Q0eggNOG:KOG1470EMBL:AK118252EMBL:CP002684
EnsemblPlants:AT1G14820EnsemblPlants:AT1G14820.1EnsemblPlants:AT1G14820.2entrez:838047
ExpressionAtlas:Q8GXG8Gene3D:3.40.525.10GeneID:838047Gramene:AT1G14820.1
Gramene:AT1G14820.2hmmpanther:PTHR10174hmmpanther:PTHR10174:SF121HOGENOM:HOG000238630
InterPro:IPR001251InterPro:IPR011074KEGG:ath:AT1G14820Pfam:PF00650
Pfscan:PS50191PhylomeDB:Q8GXG8PROSITE:PS50191Proteomes:UP000006548
RefSeq:NP_172935.2RefSeq:NP_973830.1SMART:SM00516SMR:Q8GXG8
STRING:3702.AT1G14820.3SUPFAM:SSF46938SUPFAM:SSF52087TAIR:AT1G14820
UniGene:At.41951UniProt:Q8GXG8
Coordinates (TAIR10) chr1:-:5105237..5106454
Molecular Weight (calculated) 26799.60 Da
IEP (calculated) 8.44
GRAVY (calculated) -0.06
Length 239 amino acids
Sequence (TAIR10)
(BLAST)
001: MVFVVVVSSE KGYDKPTLMR FLVARSMDPV KAAKMFVDWQ KWRASMVPPT GFIPESEVQD ELEFRKVCLQ GPTKSGHPLV LVITSKHFAS KDPANFKKFV
101: VYALDKTIAS GNNGKEVGGE KLVAVIDLAN ITYKNLDARG LITGFQFLQS YYPERLAKCY ILHMPGFFVT VWKFVCRFLE KATQEKIVIV TDGEEQRKFE
201: EEIGADALPE EYGGRAKLTA IQDVLLPQAA PVTLTNNNV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)