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AT5G65000.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.355
extracellular 0.349
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Nucleotide-sugar transporter family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Nucleotide-sugar transporter family protein; FUNCTIONS IN: nucleotide-sugar transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: carbohydrate transport, nucleotide-sugar transport; LOCATED IN: integral to membrane, Golgi membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleotide-sugar transporter (InterPro:IPR007271), UDP/CMP-sugar transporter (InterPro:IPR021189); BEST Arabidopsis thaliana protein match is: Nucleotide-sugar transporter family protein (TAIR:AT4G35335.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0697eggNOG:KOG2234EMBL:AB019236EMBL:AK226979
EMBL:AY072020EMBL:AY085268EMBL:BT029465EMBL:BT030009
EMBL:CP002688EnsemblPlants:AT5G65000EnsemblPlants:AT5G65000.1entrez:836624
GeneID:836624Genevisible:Q8LES0GO:GO:0000139GO:GO:0005351
GO:GO:0005463GO:GO:0005783GO:GO:0010584GO:GO:0015136
GO:GO:0015739GO:GO:0015789GO:GO:0016021GO:GO:1902183
GO:GO:1903070GO:GO:1903857GO:GO:1905039GO:GO:1990569
hmmpanther:PTHR10231hmmpanther:PTHR10231:SF3HOGENOM:HOG000264894InParanoid:Q8LES0
InterPro:IPR007271iPTMnet:Q8LES0KEGG:ath:AT5G65000KO:K15272
OMA:PPSLYCLPANTHER:PTHR10231PaxDb:Q8LES0Pfam:PF04142
Pfam:Q8LES0PhylomeDB:Q8LES0PIRSF:PIRSF005799PRIDE:Q8LES0
PRO:PR:Q8LES0ProteinModelPortal:Q8LES0Proteomes:UP000006548RefSeq:NP_569004.1
RefSeq:NP_974995.1STRING:3702.AT5G65000.1SUPFAM:0043518TAIR:AT5G65000
TCDB:2.A.7.12.15TMHMM:TMhelixUniGene:At.7859UniProt:Q8LES0
Coordinates (TAIR10) chr5:-:25965123..25967307
Molecular Weight (calculated) 34837.60 Da
IEP (calculated) 10.15
GRAVY (calculated) 0.61
Length 325 amino acids
Sequence (TAIR10)
(BLAST)
001: MATANGAKSP SSMGPKVLFY SILLTLQYGA QPLISKRCIR KDVIVTSSVL TCEIVKVICA LILMARNGSL KGLAKEWTLM GSLTASGLPA AIYALQNSLL
101: QISYRSLDSL TFSILNQTKI FFTAFFTFII LRQKQSILQI GALCLLIMAA VLLSVGEGSN KDSSGINADQ KLFYGIIPVL AASVLSGLAS SLCQWASQVK
201: KHSSYLMTVE MSIVGSLCLL VSTLKSPDGE AIKKYGFFHG WTALTLVPVI SNALGGILVG LVTSHAGGVR KGFVIVSALL VTALLQFAFE GKPPSSYCLV
301: ALPLVMSSIS MYQKYPYIDK KKKKV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)