AT5G55530.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Calcium-dependent lipid-binding (CaLB domain) family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Calcium-dependent lipid-binding (CaLB domain) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT1G50570.2); Has 714 Blast hits to 549 proteins in 143 species: Archae - 0; Bacteria - 238; Metazoa - 96; Fungi - 112; Plants - 147; Viruses - 6; Other Eukaryotes - 115 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:22494439..22495656 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 44128.90 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.48 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.58 | ||||||||||||||||||||||||||||||||
| Length | 405 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDSPQSVVSP FKIGESENEN SNSVQSSGNQ SNGINSNGKD SKSCGRQDLV GALEVYVHQA RDIHNICIYH KQDVYAKLCL TSDPDKSVST KIINGGGRNP 101: VFDDNVKLDV RVLDTSLKCE IYMMSRVKNY LEDQLLGFTL VPMSELLFKN GKLEKEFSLS STDLYHSPAG FVQLSLSYYG SYPDVMAIPS MPSSVSIDET 201: TKDPEGSESV PGELDKIEFP DPNVANENEK MVSEYFGISC STIDSETSDS LVTSDAENHV TNSVTSILKQ DSPESSNATN GAASPHASAH SATETPNHEH 301: LSVVNSKASS QESESEASGE TSEEKTVKSV LTVKVEPESK VVQQDIVDMY MKSMQQFTDS LAKMKLPLDI DSPTKSENSS SDSQKLPTPK SNNGSRVFYG 401: SRPFF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)