AT1G50570.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Calcium-dependent lipid-binding (CaLB domain) family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Calcium-dependent lipid-binding (CaLB domain) family protein; CONTAINS InterPro DOMAIN/s: C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT5G55530.2); Has 225 Blast hits to 222 proteins in 54 species: Archae - 0; Bacteria - 19; Metazoa - 23; Fungi - 31; Plants - 136; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:18726400..18727566 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 42154.80 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.18 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.34 | ||||||||||||||||||||||||||||||||
| Length | 388 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MESPHSEASI VNGSIHLNGS GETKTKNIVM SSDSDSFIGV LEVFVHQARD IHNICIYHKQ DVYAKLCLTN DPENSLSTKI INGGGQNPVF DDTLQFDVKN 101: LDCSLKCEIF MMSRVKNYLE DQLLGFSLVP LSEVIVRNGK LEKEFSLSST DLYHSPAGFV ELSLSYAGDS PDVMHIPAVP TADETELAPI EFDESEFLDP 201: KIVCENNQMV SKYFSTTCSD SDDFASSETG FVEVNSILSA VVETAVDEAA PANSVSTNGI SSPSTAVSSG SSGTHDVSKQ SSEGNNSDSE QEAKKPTDII 301: KSGDLDKTDE EAVVKPVLTV NIEPEQKVVQ QDIVDMYTKS LQQFTESLAK MKLPLDIDSP TQSENSSSSQ QTPKSASSRV FYGSRAFF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)