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AT4G00355.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.922
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:21896887 (2011): mitochondrion mitochondrial envelope mitochondrial outer membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G45980.1); Has 100 Blast hits to 97 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 100; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0534eggNOG:KOG1347EMBL:AF013293EMBL:AF195115
EMBL:AK316778EMBL:AK317403EMBL:AK317431EMBL:AL161471
EMBL:AY072334EMBL:BT001202EMBL:CP002687EnsemblPlants:AT4G00355
EnsemblPlants:AT4G00355.1EnsemblPlants:AT4G00355.2EnsemblPlants:AT4G00355.3EnsemblPlants:AT4G00355.4
entrez:827659ExpressionAtlas:Q8VY98GeneID:827659Genevisible:Q8VY98
GO:GO:0005783GO:GO:0005789GO:GO:0006914GO:GO:0015031
GO:GO:0016021GO:GO:0043231hmmpanther:PTHR34797hmmpanther:PTHR34797:SF1
iPTMnet:Q8VY98KEGG:ath:AT4G00355OMA:LMGPISRPaxDb:Q8VY98
PhylomeDB:Q8VY98Proteomes:UP000006548RefSeq:NP_001031565.1RefSeq:NP_567174.1
RefSeq:NP_849272.1RefSeq:NP_849274.2STRING:3702.AT4G00355.1TAIR:AT4G00355
UniGene:At.21509UniProt:Q8VY98
Coordinates (TAIR10) chr4:+:155207..156090
Molecular Weight (calculated) 29225.80 Da
IEP (calculated) 4.41
GRAVY (calculated) -0.60
Length 266 amino acids
Sequence (TAIR10)
(BLAST)
001: MADKDEAATR GNDWEVVSLT ASAYAAAPGP KPVVDSKDDD HKEVTPCYEA ETSHPLYMSR HFVFPPTGQL ENTSDLTEAS LTGSHCKEGS DLSLKGLDLS
101: DDFGGLEFSE DKGKKEENIY TTAMSSLDDE RAIGGSHVYE PVEEPTEPVS PSDVTLDLNP IKDDEVANSP PSEEAWWKRS VASLIAQAKE TNTVWSICIA
201: AAVMGIVILG QHWQQERWQI LQQKWESSIG NEKAGRLMGP ISRLKQAFVG GQRRDSFIRA SAQNDR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)