AT4G19860.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 0.971 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : alpha/beta-Hydrolases superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: phosphatidylcholine-sterol O-acyltransferase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Lecithin:cholesterol acyltransferase (InterPro:IPR003386); BEST Arabidopsis thaliana protein match is: lecithin:cholesterol acyltransferase 3 (TAIR:AT3G03310.1); Has 596 Blast hits to 589 proteins in 168 species: Archae - 2; Bacteria - 89; Metazoa - 166; Fungi - 41; Plants - 181; Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:10777655..10780260 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 60433.90 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.80 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.26 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 535 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSLLLEEIIR SVEALLKLRN RNQEPYVDPN LNPVLLVPGI AGSILNAVDH ENGNEERVWV RIFGADHEFR TKMWSRFDPS TGKTISLDPK TSIVVPQDRA 101: GLHAIDVLDP DMIVGRESVY YFHEMIVEMI GWGFEEGKTL FGFGYDFRQS NRLQETLDQF AKKLETVYKA SGEKKINVIS HSMGGLLVKC FMGLHSDIFE 201: KYVQNWIAIA APFRGAPGYI TSTLLNGMSF VNGWEQNFFV SKWSMHQLLI ECPSIYELMC CPYFKWELPP VLELWREKES NDGVGTSYVV LESYCSLESL 301: EVFTKSLSNN TADYCGESID LPFNWKIMEW AHKTKQVLAS AKLPPKVKFY NIYGTNLETP HSVCYGNEKM PVKDLTNLRY FQPTYICVDG DGTVPMESAM 401: ADGLEAVARV GVPGEHRGIL NDHRVFRMLK KWLNVGEPDP FYNPVNDYVI LPTTYEFEKF HENGLEVASV KESWDIISDD NNIGTTGSTV NSISVSQPGD 501: DQNPQAEARA TLTVQPQSDG RQHVELNAVS VSVDA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)