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AT3G10740.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25852701 (2015): extracellular region apoplast
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:16356755 (2006): extracellular region
  • PMID:15694452 (2005): extracellular region
  • PMID:15539469 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : alpha-L-arabinofuranosidase 1
Curator
Summary (TAIR10)
Encodes a bifunctional alpha-l-arabinofuranosidase/beta-d-xylosidase that belongs to family 51 of glycoside hydrolases. It may be involved in cell wall modification.
Computational
Description (TAIR10)
alpha-L-arabinofuranosidase 1 (ASD1); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xylan 1,4-beta-xylosidase activity, alpha-N-arabinofuranosidase activity; INVOLVED IN: xylan catabolic process; LOCATED IN: apoplast, vacuole, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alpha-L-arabinofuranosidase, C-terminal (InterPro:IPR010720), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: alpha-L-arabinofuranosidase 2 (TAIR:AT5G26120.1); Has 1627 Blast hits to 1611 proteins in 407 species: Archae - 8; Bacteria - 1238; Metazoa - 0; Fungi - 173; Plants - 169; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G10740-MONOMERCAZy:GH51EC:3.2.1.-EC:3.2.1.55
eggNOG:COG3534eggNOG:ENOG410IK9REMBL:AC011708EMBL:AF372949
EMBL:AK220766EMBL:AK222175EMBL:AY143944EMBL:AY243509
EMBL:CP002686EnsemblPlants:AT3G10740EnsemblPlants:AT3G10740.1entrez:820243
Gene3D:2.60.120.260GeneID:820243Genevisible:Q9SG80GO:GO:0005578
GO:GO:0005773GO:GO:0009044GO:GO:0009505GO:GO:0045493
GO:GO:0046373GO:GO:0046556GO:GO:0048046Gramene:AT3G10740.1
hmmpanther:PTHR31776hmmpanther:PTHR31776:SF0HOGENOM:HOG000115340InParanoid:Q9SG80
InterPro:IPR008979InterPro:IPR010720InterPro:IPR017853KEGG:00520+3.2.1.55
KEGG:ath:AT3G10740KO:K01209OMA:TNEARDEPaxDb:Q9SG80
Pfam:PF06964Pfam:Q9SG80Pfscan:PS51257PhylomeDB:Q9SG80
PRIDE:Q9SG80PRO:PR:Q9SG80ProteinModelPortal:Q9SG80Proteomes:UP000006548
RefSeq:NP_187685.1SABIO-RK:Q9SG80SMART:SM00813SMR:Q9SG80
STRING:3702.AT3G10740.1SUPFAM:SSF49785SUPFAM:SSF51011SUPFAM:SSF51445
TAIR:AT3G10740tair10-symbols:ARAFtair10-symbols:ARAF1tair10-symbols:ASD1
tair10-symbols:ATASD1UniGene:At.20271unipathway:UPA00667UniProt:Q9SG80
Coordinates (TAIR10) chr3:-:3361031..3364573
Molecular Weight (calculated) 75048.40 Da
IEP (calculated) 5.52
GRAVY (calculated) -0.27
Length 678 amino acids
Sequence (TAIR10)
(BLAST)
001: MDMESWKLLR SVCVLSFLLG SCFVYQSLRV VDAQEDPKPA VTLQVDASNG GGRPIPETLF GIFFEEINHA GAGGLWAELV SNRGFEAGGQ NTPSNIWPWS
101: IVGDHSSIYV ATDRSSCFER NKIALRMDVL CDSKGCPSGG VGVYNPGYWG MNIEEGKKYK VALYVRSTGD IDLSVSLTSS NGSRTLASEK IIASASDVSK
201: WIKKEVLLEA KATDPSARLQ LTTTKKGSIW IDQVSAMPVD THKGHGFRND LFQMMADIKP RFIRFPGGCF VEGEWLSNAF RWKETVGPWE ERPGHFGDVW
301: KYWTDDGLGH FEFFQMAEDI GAAPIWVFNN GISHNDEVET ASIMPFVQEA LDGIEFARGD ANSTWGSVRA KMGRQEPFEL KYVAIGNEDC GKTYYRGNYI
401: VFYDAIKKAY PDIKIISNCD GSSHPLDHPA DYYDYHIYTS ASNLFSMYHQ FDRTSRKGPK AFVSEYAVTG KDAGTGSLLA SLAEAAFLIG LEKNSDIVEM
501: ASYAPLFVNT NDRRWNPDAI VFNSSHLYGT PSYWVQRFFA ESSGATLLTS TLKGNSTSLV ASAISWKNNG KDYIRIKAVN FGANSENMQV LVTGLDPNVM
601: RVSGSKKTVL TSTNVMDENS FSQPEKVVPH ESLLELAEED MTVVLPPHSF SSFDLLKESA KIRMPISDSS SHQKTTTV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)