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AT5G56870.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : beta-galactosidase 4
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
beta-galactosidase 4 (BGAL4); FUNCTIONS IN: beta-galactosidase activity; INVOLVED IN: lactose catabolic process, using glucoside 3-dehydrogenase, carbohydrate metabolic process, lactose catabolic process via UDP-galactose, lactose catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35, conserved site (InterPro:IPR019801), Glycoside hydrolase, family 35 (InterPro:IPR001944), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: beta-galactosidase 12 (TAIR:AT4G26140.1); Has 2215 Blast hits to 2058 proteins in 473 species: Archae - 15; Bacteria - 949; Metazoa - 388; Fungi - 211; Plants - 584; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G56870-MONOMERBioGrid:21033CAZy:GH35EC:3.2.1.23
eggNOG:COG1874eggNOG:KOG0496EMBL:AB020747EMBL:AJ270300
EMBL:AK222026EMBL:AY054589EMBL:AY064690EMBL:CP002688
EnsemblPlants:AT5G56870EnsemblPlants:AT5G56870.1entrez:835789Gene3D:2.60.120.260
Gene3D:3.20.20.80GeneID:835789Genevisible:Q9SCV8GO:GO:0004565
GO:GO:0005618GO:GO:0005975GO:GO:0048046Gramene:AT5G56870.1
hmmpanther:PTHR23421hmmpanther:PTHR23421:SF74HOGENOM:HOG000239919InParanoid:Q9SCV8
InterPro:IPR001944InterPro:IPR008979InterPro:IPR013781InterPro:IPR017853
InterPro:IPR019801InterPro:IPR031330KEGG:00052+3.2.1.23KEGG:00511+3.2.1.23
KEGG:00531+3.2.1.23KEGG:00600+3.2.1.23KEGG:00604+3.2.1.23KEGG:ath:AT5G56870
OMA:WVAQMALPANTHER:PTHR23421PaxDb:Q9SCV8Pfam:PF01301
Pfam:Q9SCV8Pfscan:PS51257PhylomeDB:Q9SCV8PRIDE:Q9SCV8
PRINTS:PR00742PRO:PR:Q9SCV8PROSITE:PS01182ProteinModelPortal:Q9SCV8
Proteomes:UP000006548RefSeq:NP_200498.1SABIO-RK:Q9SCV8scanprosite:PS01182
SMR:Q9SCV8STRING:3702.AT5G56870.1SUPFAM:SSF49785SUPFAM:SSF51445
TAIR:AT5G56870tair10-symbols:BGAL4TMHMM:TMhelixUniGene:At.21539
UniProt:Q9SCV8
Coordinates (TAIR10) chr5:+:23004284..23008410
Molecular Weight (calculated) 80595.30 Da
IEP (calculated) 8.88
GRAVY (calculated) -0.24
Length 724 amino acids
Sequence (TAIR10)
(BLAST)
001: MVLNFRDKSC IFLAILCCLS LSCIVKASVS YDRKAVIING QRRILLSGSI HYPRSTPEMW PGLIQKAKEG GLDVIETYVF WNGHEPSPGQ YYFGDRYDLV
101: KFIKLVHQAG LYVNLRIGPY VCAEWNFGGF PVWLKFVPGM AFRTDNEPFK AAMKKFTEKI VWMMKAEKLF QTQGGPIILA QIENEYGPVE WEIGAPGKAY
201: TKWVAQMALG LSTGVPWIMC KQEDAPGPII DTCNGYYCED FKPNSINKPK MWTENWTGWY TDFGGAVPYR PVEDIAYSVA RFIQKGGSLV NYYMYHGGTN
301: FDRTAGEFMA SSYDYDAPLD EYGLPREPKY SHLKALHKAI KLSEPALLSA DATVTSLGAK QEAYVFWSKS SCAAFLSNKD ENSAARVLFR GFPYDLPPWS
401: VSILPDCKTE VYNTAKVNAP SVHRNMVPTG TKFSWGSFNE ATPTANEAGT FARNGLVEQI SMTWDKSDYF WYITDITIGS GETFLKTGDS PLLTVMSAGH
501: ALHVFVNGQL SGTAYGGLDH PKLTFSQKIK LHAGVNKIAL LSVAVGLPNV GTHFEQWNKG VLGPVTLKGV NSGTWDMSKW KWSYKIGVKG EALSLHTNTE
601: SSGVRWTQGS FVAKKQPLTW YKSTFATPAG NEPLALDMNT MGKGQVWING RNIGRHWPAY KAQGSCGRCN YAGTFDAKKC LSNCGEASQR WYHVPRSWLK
701: SQNLIVVFEE LGGDPNGISL VKRT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)