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AT5G49360.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Predictors External Curations
SwissProt : extracellular 16381842
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31932409 (2020): plastid
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:28003327 (2017): extracellular region apoplast
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23549413 (2013): plastid
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:19334764 (2009): plasma membrane
  • PMID:16356755 (2006): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : beta-xylosidase 1
Curator
Summary (TAIR10)
Encodes a bifunctional {beta}-D-xylosidase/{alpha}-L-arabinofuranosidase required for pectic arabinan modification. Located in the extracellular matrix. Gene is expressed specifically in tissues undergoing secondary wall thickening. This is a member of glycosyl hydrolase family 3 and has six other closely related members.
Computational
Description (TAIR10)
beta-xylosidase 1 (BXL1); FUNCTIONS IN: alpha-N-arabinofuranosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: seed coat development; LOCATED IN: apoplast, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 3, N-terminal (InterPro:IPR001764), Glycoside hydrolase, family 3, C-terminal (InterPro:IPR002772), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: beta-xylosidase 2 (TAIR:AT1G02640.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G49360-MONOMERBioGrid:20242BRENDA:3.2.1.37CAZy:GH3
EC:3.2.1.-EC:3.2.1.55eggNOG:COG1472eggNOG:ENOG410IESU
eggNOG:ENOG410JBDHEMBL:AB023034EMBL:AY120767EMBL:CP002688
EnsemblPlants:AT5G49360EnsemblPlants:AT5G49360.1entrez:834996Gene3D:3.20.20.300
Gene3D:3.40.50.1700GeneID:834996Genevisible:Q9FGY1GO:GO:0005578
GO:GO:0009044GO:GO:0009505GO:GO:0010214GO:GO:0031222
GO:GO:0045493GO:GO:0046556GO:GO:0048046Gramene:AT5G49360.1
hmmpanther:PTHR30620hmmpanther:PTHR30620:SF50HOGENOM:HOG000031216InParanoid:Q9FGY1
InterPro:IPR001764InterPro:IPR002772InterPro:IPR017853InterPro:IPR026891
InterPro:IPR026892KEGG:ath:AT5G49360OMA:CAGVACKPANTHER:PTHR30620
PaxDb:Q9FGY1Pfam:PF00933Pfam:PF01915Pfam:PF14310
Pfam:Q9FGY1PhylomeDB:Q9FGY1PRIDE:Q9FGY1PRINTS:PR00133
PRO:PR:Q9FGY1ProteinModelPortal:Q9FGY1Proteomes:UP000006548RefSeq:NP_199747.1
SABIO-RK:Q9FGY1SMART:SM01217SMR:Q9FGY1STRING:3702.AT5G49360.1
SUPFAM:0046644SUPFAM:SSF51445SUPFAM:SSF52279TAIR:AT5G49360
tair10-symbols:ATBXL1tair10-symbols:BXL1TMHMM:TMhelixUniGene:At.22961
UniGene:At.28192UniGene:At.47570UniProt:Q9FGY1
Coordinates (TAIR10) chr5:-:20012179..20016659
Molecular Weight (calculated) 83528.30 Da
IEP (calculated) 8.61
GRAVY (calculated) -0.06
Length 774 amino acids
Sequence (TAIR10)
(BLAST)
001: MSCYNKALLI GNKVVVILVF LLCLVHSSES LRPLFACDPA NGLTRTLRFC RANVPIHVRV QDLLGRLTLQ EKIRNLVNNA AAVPRLGIGG YEWWSEALHG
101: ISDVGPGAKF GGAFPGATSF PQVITTAASF NQSLWEEIGR VVSDEARAMY NGGVAGLTYW SPNVNILRDP RWGRGQETPG EDPIVAAKYA ASYVRGLQGT
201: AAGNRLKVAA CCKHYTAYDL DNWNGVDRFH FNAKVTQQDL EDTYNVPFKS CVYEGKVASV MCSYNQVNGK PTCADENLLK NTIRGQWRLN GYIVSDCDSV
301: DVFFNQQHYT STPEEAAARS IKAGLDLDCG PFLAIFTEGA VKKGLLTEND INLALANTLT VQMRLGMFDG NLGPYANLGP RDVCTPAHKH LALEAAHQGI
401: VLLKNSARSL PLSPRRHRTV AVIGPNSDVT ETMIGNYAGK ACAYTSPLQG ISRYARTLHQ AGCAGVACKG NQGFGAAEAA AREADATVLV MGLDQSIEAE
501: TRDRTGLLLP GYQQDLVTRV AQASRGPVIL VLMSGGPIDV TFAKNDPRVA AIIWAGYPGQ AGGAAIANII FGAANPGGKL PMTWYPQDYV AKVPMTVMAM
601: RASGNYPGRT YRFYKGPVVF PFGFGLSYTT FTHSLAKSPL AQLSVSLSNL NSANTILNSS SHSIKVSHTN CNSFPKMPLH VEVSNTGEFD GTHTVFVFAE
701: PPINGIKGLG VNKQLIAFEK VHVMAGAKQT VQVDVDACKH LGVVDEYGKR RIPMGEHKLH IGDLKHTILV QPQL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)