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AT5G21170.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : 5'-AMP-activated protein kinase beta-2 subunit protein
Curator
Summary (TAIR10)
Encodes AKINbeta1, a subunit of the SnRK1 kinase (Sucrose non-fermenting-1-related protein kinase). Involved in regulation of nitrogen and sugar metabolism.
Computational
Description (TAIR10)
AKINBETA1; FUNCTIONS IN: AMP-activated protein kinase activity; INVOLVED IN: N-terminal protein myristoylation, cellular response to nitrogen levels; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: 5-AMP-activated protein kinase, beta subunit, interaction domain (InterPro:IPR006828); BEST Arabidopsis thaliana protein match is: 5'-AMP-activated protein kinase beta-2 subunit protein (TAIR:AT4G16360.3); Has 697 Blast hits to 689 proteins in 198 species: Archae - 0; Bacteria - 3; Metazoa - 248; Fungi - 167; Plants - 204; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).
Protein Annotations
BioGrid:17518CAZy:CBM48EMBL:AC140977EMBL:AJ132315
EMBL:AY088139EMBL:CP002688EnsemblPlants:AT5G21170EnsemblPlants:AT5G21170.1
entrez:832243ExpressionAtlas:Q84VQ1GeneID:832243Genevisible:Q84VQ1
GO:GO:0005524GO:GO:0005975GO:GO:0006633GO:GO:0009744
GO:GO:0042128GO:GO:0043562hmmpanther:PTHR10343hmmpanther:PTHR10343:SF51
HOGENOM:HOG000230597InParanoid:Q84VQ1IntAct:Q84VQ1InterPro:IPR006828
InterPro:IPR014756InterPro:IPR030067InterPro:IPR032640iPTMnet:Q84VQ1
PANTHER:PTHR10343:SF51Pfam:PF04739Pfam:PF16561Pfam:Q84VQ1
PhylomeDB:Q84VQ1PRIDE:Q84VQ1PRO:PR:Q84VQ1ProteinModelPortal:Q84VQ1
Proteomes:UP000006548Reactome:R-ATH-163680Reactome:R-ATH-200425Reactome:R-ATH-380972
RefSeq:NP_197615.1SMART:SM01010SMR:Q84VQ1SUPFAM:SSF160219
SUPFAM:SSF81296TAIR:AT5G21170tair10-symbols:AKINBETA1UniGene:At.21001
UniProt:Q29Q48UniProt:Q84VQ1
Coordinates (TAIR10) chr5:+:7205718..7208239
Molecular Weight (calculated) 30725.80 Da
IEP (calculated) 6.03
GRAVY (calculated) -0.49
Length 283 amino acids
Sequence (TAIR10)
(BLAST)
001: MGNANGKDED AAAGSGGADV TSSSARSNGG DPSARSRHRR PSSDSMSSSP PGSPARSPSP FLFAPQVPVA PLQRANAPPP NNIQWNQSQR VFDNPPEQGI
101: PTIITWNQGG NDVAVEGSWD NWRSRKKLQK SGKDHSILFV LPSGIYHYKV IVDGESKYIP DLPFVADEVG NVCNILDVHN FVPENPESIV EFEAPPSPDH
201: SYGQTLPAAE DYAKEPLAVP PQLHLTLLGT TEETAIATKP QHVVLNHVFI EQGWTPQSIV ALGLTHRFES KYITVVLYKP LTR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)