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AT4G35770.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24124904 (2013): plastid
  • PMID:18433418 (2008): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Rhodanese/Cell cycle control phosphatase superfamily protein
Curator
Summary (TAIR10)
Senescence-associated gene that is strongly induced by phosphate starvation. Transcripts are differentially regulated at the level of mRNA stability at different times of day. mRNAs are targets of the mRNA degradation pathway mediated by the downstream (DST) instability determinant.
Computational
Description (TAIR10)
SENESCENCE 1 (SEN1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: in 6 processes; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763); BEST Arabidopsis thaliana protein match is: sulfurtransferase protein 16 (TAIR:AT5G66040.1); Has 1680 Blast hits to 1680 proteins in 570 species: Archae - 16; Bacteria - 1250; Metazoa - 4; Fungi - 10; Plants - 192; Viruses - 0; Other Eukaryotes - 208 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-867-MONOMERBioGrid:15012BRENDA:2.8.1.1eggNOG:COG0607
eggNOG:KOG1530EMBL:AL031135EMBL:AL161588EMBL:AY078973
EMBL:AY085192EMBL:AY091671EMBL:CP002687EMBL:U26944
EMBL:U26945EnsemblPlants:AT4G35770EnsemblPlants:AT4G35770.1entrez:829730
ExpressionAtlas:Q38853Gene3D:3.40.250.10GeneID:829730Genevisible:Q38853
GO:GO:0006979GO:GO:0007568GO:GO:0009507GO:GO:0009579
GO:GO:0009611GO:GO:0009753hmmpanther:PTHR12231HOGENOM:HOG000015173
InParanoid:Q38853IntAct:Q38853InterPro:IPR001763iPTMnet:Q38853
KEGG:ath:AT4G35770OMA:CESGQMSPaxDb:Q38853Pfam:PF00581
Pfam:Q38853Pfscan:PS50206PhylomeDB:Q38853PIR:T04682
PRIDE:Q38853PRO:PR:Q38853PROSITE:PS50206ProteinModelPortal:Q38853
Proteomes:UP000006548RefSeq:NP_001078496.1RefSeq:NP_195302.1SMART:SM00450
SMR:Q38853STRING:3702.AT4G35770.1SUPFAM:SSF52821TAIR:AT4G35770
tair10-symbols:ATSEN1tair10-symbols:DIN1tair10-symbols:SEN1UniGene:At.24896
UniGene:At.67197UniProt:Q38853
Coordinates (TAIR10) chr4:+:16945073..16945983
Molecular Weight (calculated) 20079.90 Da
IEP (calculated) 9.21
GRAVY (calculated) -0.23
Length 182 amino acids
Sequence (TAIR10)
(BLAST)
001: METTAFNTTS RIGNWSSAIS PPLQTCGSFK CQLPTRRGVI VADLRNSNFR WRKATTTSRG NVAAEAVKIP TSVPVRVARE LAQAGYRYLD VRTPDEFSIG
101: HPTRAINVPY MYRVGSGMVK NPSFLRQVSS HFRKHDEIII GCESGQMSFM ASTDLLTAGF TAITDIAGGY VAWTENELPV EE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)