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AT4G21810.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 1.000
ASURE: endoplasmic reticulum
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DERLIN-2.1
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DERLIN-2.1 (DER2.1); CONTAINS InterPro DOMAIN/s: Der1-like (InterPro:IPR007599); BEST Arabidopsis thaliana protein match is: DERLIN-2.2 (TAIR:AT4G04860.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5291eggNOG:KOG0858EMBL:AL021890EMBL:AL035527
EMBL:AL161555EMBL:AY065142EMBL:BT001199EMBL:CP002687
EnsemblPlants:AT4G21810EnsemblPlants:AT4G21810.1entrez:828269GeneID:828269
Genevisible:Q8VZ96GO:GO:0005789GO:GO:0016021Gramene:AT4G21810.1
hmmpanther:PTHR11009HOGENOM:HOG000200948InParanoid:Q8VZ96InterPro:IPR007599
KEGG:ath:AT4G21810KO:K13989OMA:PEHQPRDPANTHER:PTHR11009
PaxDb:Q8VZ96Pfam:PF04511Pfam:Q8VZ96PIR:B85249
PIR:T05463PRIDE:Q8VZ96PRO:PR:Q8VZ96ProteinModelPortal:Q8VZ96
Proteomes:UP000006548Reactome:R-ATH-5358346Reactome:R-ATH-901032RefSeq:NP_193912.3
STRING:3702.AT4G21810.1SUPFAM:SSF144091TAIR:AT4G21810tair10-symbols:DER2.1
TMHMM:TMhelixUniGene:At.27392UniGene:At.48892UniProt:Q8VZ96
Coordinates (TAIR10) chr4:-:11575345..11577003
Molecular Weight (calculated) 28214.80 Da
IEP (calculated) 8.57
GRAVY (calculated) 0.48
Length 244 amino acids
Sequence (TAIR10)
(BLAST)
001: MAQAVEEWYK QMPIITRSYL TAAVVTTVGC SLEIISPYNL YLNPTLVVKQ YQFWRLVTNF LYFRKMDLDF LFHMFFLARY CKLLEENSFR GKTADFLYML
101: LFGATVLTGI VLIGGMIPYL SVSFSKIIFL SNSLTFMMVY VWSKQNPYIH MSFLGLFTFT AAYLPWVLLG FSILVGASAW GDFLGMIAGH AYYFLAFVYP
201: RMTDRRPLKT PSFLKALFAD EPVVIARPED VRFAHAPFDE IHQD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)