AT3G60340.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:vacuole 0.998 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||
Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||
Description (TAIR10) | protein_coding : alpha/beta-Hydrolases superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: palmitoyl-(protein) hydrolase activity; INVOLVED IN: protein modification process; LOCATED IN: vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Palmitoyl protein thioesterase (InterPro:IPR002472); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT5G47330.1); Has 611 Blast hits to 607 proteins in 157 species: Archae - 0; Bacteria - 0; Metazoa - 315; Fungi - 98; Plants - 140; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||
Coordinates (TAIR10) | chr3:+:22304395..22306389 | ||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 37085.70 Da | ||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 5.00 | ||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | 0.08 | ||||||||||||||||||||||||||||||||||||||||||||
Length | 338 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MDFLKATIIV ALICNFASLA SSVPFIVLHG IGDKCSNAGV TQFTELLSDW SGSQGYCLEI GNGSWDSWTM PLLDQTSVVC EKVKSMPELS DGYSIVGLSQ 101: GNMIGRALIE FCDGAPPVKS FVSVAGPHAG TASIPFCGAT WICIMLDSMI KAEIYSDYMQ EHLAPSGFLK IPTDIAGYME GCRFLPKLNN ELPVKNSTYK 201: ERFSSLENLV LIMFEHDTIL IPKETSWFGY YPDGSFKTIL PPQETKLYTE DWIGLRTLDE AGKVKFVNVS GNHLQISHTD MKKHIVPYLC DKSSSSSSTT 301: MAVSGSSSSH QWLPSVGNII MDLIGPEVDQ LQLVLRHV |
||||||||||||||||||||||||||||||||||||||||||||
See Also |
|
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)