suba logo
AT1G12780.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): cytosol None
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:21166475 (2011): cytosol
  • PMID:17644812 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : UDP-D-glucose/UDP-D-galactose 4-epimerase 1
Curator
Summary (TAIR10)
Encodes a UDP-glucose epimerase that catalyzes the interconversion of the sugar nucleotides UDP-glucose UDP-galactose via a UDP-4-keto-hexose intermediate. Responsive to stress.
Computational
Description (TAIR10)
UDP-D-glucose/UDP-D-galactose 4-epimerase 1 (UGE1); FUNCTIONS IN: UDP-glucose 4-epimerase activity, protein dimerization activity; INVOLVED IN: response to stress, galactose biosynthetic process; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 32 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040), UDP-glucose 4-epimerase (InterPro:IPR005886), Nucleotide sugar epimerase (InterPro:IPR008089); BEST Arabidopsis thaliana protein match is: UDP-D-glucose/UDP-D-galactose 4-epimerase 3 (TAIR:AT1G63180.1); Has 42430 Blast hits to 42420 proteins in 2995 species: Archae - 799; Bacteria - 25009; Metazoa - 650; Fungi - 500; Plants - 1081; Viruses - 38; Other Eukaryotes - 14353 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G12780-MONOMERBioCyc:MetaCyc:AT1G12780-MONOMERBioGrid:23074BRENDA:5.1.3.2
BRENDA:5.1.3.5EC:5.1.3.2EC:5.1.3.5eggNOG:COG1087
eggNOG:KOG1371EMBL:AC012187EMBL:AF334724EMBL:AK317768
EMBL:AY054207EMBL:AY120709EMBL:BT000032EMBL:CP002684
EMBL:Z54214EnsemblPlants:AT1G12780EnsemblPlants:AT1G12780.1entrez:837834
Gene3D:3.40.50.720GeneID:837834Genevisible:Q42605GO:GO:0003978
GO:GO:0005829GO:GO:0005886GO:GO:0006012GO:GO:0033358
GO:GO:0045227GO:GO:0050373GO:GO:0071555Gramene:AT1G12780.1
hmmpanther:PTHR10366hmmpanther:PTHR10366:SF331HOGENOM:HOG000168001InParanoid:Q42605
IntAct:Q42605InterPro:IPR005886InterPro:IPR008089InterPro:IPR016040
KEGG:00052+5.1.3.2KEGG:00520+5.1.3.2KEGG:ath:AT1G12780KO:K01784
OMA:CQENILVPaxDb:Q42605Pfam:PF16363Pfam:Q42605
PhylomeDB:Q42605PIR:B86261PIR:S62783PRIDE:Q42605
PRINTS:PR01713PRO:PR:Q42605ProteinModelPortal:Q42605Proteomes:UP000006548
Reactome:R-ATH-70370RefSeq:NP_172738.1SABIO-RK:Q42605SMR:Q42605
STRING:3702.AT1G12780.1SUPFAM:SSF51735TAIR:AT1G12780tair10-symbols:ATUGE1
tair10-symbols:UGE1TIGRfam:TIGR01179TIGRFAMs:TIGR01179UniGene:At.20506
UniGene:At.27284UniPathway:UPA00214UniPathway:UPA00797UniPathway:UPA00963
UniProt:Q42605
Coordinates (TAIR10) chr1:-:4356124..4358120
Molecular Weight (calculated) 39159.90 Da
IEP (calculated) 6.52
GRAVY (calculated) -0.34
Length 351 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSSVEQNIL VTGGAGFIGT HTVVQLLKDG FKVSIIDNFD NSVIEAVDRV RELVGPDLSK KLDFNLGDLR NKGDIEKLFS KQRFDAVIHF AGLKAVGESV
101: ENPRRYFDNN LVGTINLYET MAKYNCKMMV FSSSATVYGQ PEKIPCMEDF ELKAMNPYGR TKLFLEEIAR DIQKAEPEWR IILLRYFNPV GAHESGSIGE
201: DPKGIPNNLM PYIQQVAVGR LPELNVYGHD YPTEDGSAVR DYIHVMDLAD GHIAALRKLF ADPKIGCTAY NLGTGQGTSV LEMVAAFEKA SGKKIPIKLC
301: PRRSGDATAV YASTEKAEKE LGWKAKYGVD EMCRDQWKWA NNNPWGYQNK L
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)