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AT1G63180.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.995
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : UDP-D-glucose/UDP-D-galactose 4-epimerase 3
Curator
Summary (TAIR10)
Encodes a protein with UDP-D-glucose 4-epimerase activity. Involved in pollen development.
Computational
Description (TAIR10)
UDP-D-glucose/UDP-D-galactose 4-epimerase 3 (UGE3); CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040), UDP-glucose 4-epimerase (InterPro:IPR005886); BEST Arabidopsis thaliana protein match is: UDP-D-glucose/UDP-D-galactose 4-epimerase 1 (TAIR:AT1G12780.1); Has 41147 Blast hits to 41136 proteins in 2978 species: Archae - 810; Bacteria - 24610; Metazoa - 646; Fungi - 484; Plants - 1052; Viruses - 38; Other Eukaryotes - 13507 (source: NCBI BLink).
Protein Annotations
BRENDA:5.1.3.2BRENDA:5.1.3.5EC:5.1.3.2EC:5.1.3.5
eggNOG:COG1087eggNOG:KOG1371EMBL:AC010795EMBL:AK117913
EMBL:AY085887EMBL:BT024882EMBL:CP002684EnsemblPlants:AT1G63180
EnsemblPlants:AT1G63180.1entrez:842622Gene3D:3.40.50.720GeneID:842622
Genevisible:Q8LDN8GO:GO:0003978GO:GO:0006012GO:GO:0009555
GO:GO:0033358GO:GO:0045227GO:GO:0050373GO:GO:0071555
Gramene:AT1G63180.1hmmpanther:PTHR10366hmmpanther:PTHR10366:SF331HOGENOM:HOG000168001
InParanoid:Q8LDN8InterPro:IPR005886InterPro:IPR016040KEGG:00052+5.1.3.2
KEGG:00520+5.1.3.2KEGG:ath:AT1G63180KO:K01784OMA:GNITNVY
PaxDb:Q8LDN8Pfam:PF16363Pfam:Q8LDN8PhylomeDB:Q8LDN8
PIR:D96657PRIDE:Q8LDN8PRO:PR:Q8LDN8ProteinModelPortal:Q8LDN8
Proteomes:UP000006548Reactome:R-ATH-70370RefSeq:NP_564811.1SABIO-RK:Q8LDN8
SMR:Q8LDN8STRING:3702.AT1G63180.1SUPFAM:SSF51735TAIR:AT1G63180
tair10-symbols:UGE3TIGRfam:TIGR01179TIGRFAMs:TIGR01179UniGene:At.36168
UniPathway:UPA00214UniPathway:UPA00797UniPathway:UPA00963UniProt:Q8LDN8
Coordinates (TAIR10) chr1:-:23427559..23429384
Molecular Weight (calculated) 38912.60 Da
IEP (calculated) 6.72
GRAVY (calculated) -0.27
Length 351 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSSVEQNIL VTGGAGFIGT HTVVQLLNQG FKVTIIDNLD NSVVEAVHRV RELVGPDLST KLEFNLGDLR NKGDIEKLFS NQRFDAVIHF AGLKAVGESV
101: GNPRRYFDNN LVGTINLYET MAKYNCKMMV FSSSATVYGQ PEIVPCVEDF ELQAMNPYGR TKLFLEEIAR DIHAAEPEWK IILLRYFNPV GAHESGRIGE
201: DPKGIPNNLM PYIQQVAVGR LPELNVFGHD YPTMDGSAVR DYIHVMDLAD GHVAALNKLF SDSKIGCTAY NLGTGQGTSV LEMVSSFEKA SGKKIPIKLC
301: PRRAGDATAV YASTQKAEKE LGWKAKYGVD EMCRDQWNWA NKNPWGFQKK P
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)